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Report for CCDS52217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52217.1 Public Mus musculus 7 4933421I07Rik 23 108 98 CCDS HistoryNCBI Gene:71162Re-query CCDS DB by CCDS ID:52217.1Re-query CCDS DB by GeneID:71162See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032648.4 ENSMUSP00000032648.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032648.4Link to Ensembl Protein Viewer:ENSMUSP00000032648.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032648Re-query CCDS DB by Protein ID:ENSMUSP00000032648
Original member Current member NCBI NM_027702.3 NP_081978.1 Accepted alive Link to Nucleotide Sequence:NM_027702.3Link to Protein Sequence:NP_081978.1Re-query CCDS DB by Nucleotide ID:NM_027702Re-query CCDS DB by Protein ID:NP_081978Link to BLAST:NP_081978.1

Chromosomal Locations for CCDS 52217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 42446178 42446439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42446947 42446994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42447551 42447753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42447937 42448068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGTTCCGCTGTTTCCAGACTTGCAGAGGCTCTGGCCACAAAAAAGCCAAGAGCAGTTGGCTTGGCTGCT
TTTGGAGACGTTTGATTCGTCCTCTGACACACTTGAGGCATGCTTCCCGCAGTGAGCCCAAGGTCTGTTG
TGAAAATGAACAGGAGCCAGACTCTATGTCCAATCACCCCCGATTCGACTACAAGAGTCGAGAATACATT
CAACAGATGATTGACTACATACCAGCTGCTATTCAAAACCGCGACCACCTCTGTCTCGACATTTTTGTTG
CCATGTACCGAACATATGCTACCACCTGGGAGGTGCTAGACCTGCTGATGAAAACGTATGCATCCTTCCG
GACTGACTGCATTGAAGACCAGCAAACTAAGAGTGCCATATTCAGCTTTCTGTTCGGCTGGTTTCAGAAA
TTCCCCCAGGATTTTTATGAGTCCCCAGACCTGGCTGTTTTGAGTCAGTTCACAGAGTATGTGAGGCTCA
ATGTGCCTTTCGGAGATGGAGATACCCAAGCCAGGGAGCCTCTCTCCATGTTTAAGGATCAGGAGGCCAT
CACACTTAGACTTGAGGAAGGTGAGAAGGTCTGGTGTTGGCTGCTTGACAAGGTAGGAGGGGGTTTCGGT
GATGGGTTTCACTAG

Translation (214 aa):
MFRCFQTCRGSGHKKAKSSWLGCFWRRLIRPLTHLRHASRSEPKVCCENEQEPDSMSNHPRFDYKSREYI
QQMIDYIPAAIQNRDHLCLDIFVAMYRTYATTWEVLDLLMKTYASFRTDCIEDQQTKSAIFSFLFGWFQK
FPQDFYESPDLAVLSQFTEYVRLNVPFGDGDTQAREPLSMFKDQEAITLRLEEGEKVWCWLLDKVGGGFG
DGFH


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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