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Report for CCDS52200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52200.1 Public Mus musculus 7 Scgb2b27 23 108 98 CCDS HistoryNCBI Gene:233099Re-query CCDS DB by CCDS ID:52200.1Re-query CCDS DB by GeneID:233099See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085620.8 ENSMUSP00000082760.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085620.8Link to Ensembl Protein Viewer:ENSMUSP00000082760.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085620Re-query CCDS DB by Protein ID:ENSMUSP00000082760
Original member Current member NCBI NM_001100464.2 NP_001093934.1 Accepted alive Link to Nucleotide Sequence:NM_001100464.2Link to Protein Sequence:NP_001093934.1Re-query CCDS DB by Nucleotide ID:NM_001100464Re-query CCDS DB by Protein ID:NP_001093934Link to BLAST:NP_001093934.1

Chromosomal Locations for CCDS 52200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 34012084 34012179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34013173 34013354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34013806 34013866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGAAGGGGACACTTCTTCTGCTGGCCTTGCTGGTGACTGGAGAGCTGGGCTTCCAGACAACGGAAGCAT
GTGCTCCTTTTGTCGGAGCCTATGTTAAAATACTGGGTGGAAATAGGCTAGCTCTGAATGCCTACCTTTC
GATGTTTCAAGCTACTGCAGCGGAAAGGGTGGCCTTTGAAAAGATCCAGGATTGCTTCAATGAGGAACCA
TTAACCACCAAATTAAAGAGTCCCCAAATAATGATGTCTATACTCTTCAGCTCTGAATGCAAGGCATACT
ATCCCGAAGATTCTGTAAACAAAATGGCGGATATGTTTAAACTGGATTCAATTAATTAG

Translation (112 aa):
MKGTLLLLALLVTGELGFQTTEACAPFVGAYVKILGGNRLALNAYLSMFQATAAERVAFEKIQDCFNEEP
LTTKLKSPQIMMSILFSSECKAYYPEDSVNKMADMFKLDSIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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