NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52179.1 Public Mus musculus 7 Rbm42 23 108 98 CCDS HistoryNCBI Gene:68035Re-query CCDS DB by CCDS ID:52179.1Re-query CCDS DB by GeneID:68035See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042726.13 ENSMUSP00000040005.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042726.13Link to Ensembl Protein Viewer:ENSMUSP00000040005.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042726Re-query CCDS DB by Protein ID:ENSMUSP00000040005
Original member Current member NCBI NM_133693.2 NP_598454.2 Accepted alive Link to Nucleotide Sequence:NM_133693.2Link to Protein Sequence:NP_598454.2Re-query CCDS DB by Nucleotide ID:NM_133693Re-query CCDS DB by Protein ID:NP_598454Link to BLAST:NP_598454.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598454.2 478 Q91V81 478 100% 0 0

Chromosomal Locations for CCDS 52179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30641108 30641220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30641308 30641502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30644499 30644616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30644826 30645158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30645667 30645842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30645919 30645984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30647560 30647634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30647731 30647815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30649584 30649719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30649938 30650077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCATCAGCGATGGCCGGAGCAGGGCCGGCTCCGGGACTCCCGGTGGCGGGAGGGCCGGTGGTCCCGG
GGCCTGGTGTCGGCATCCCGGGCAAGAGCGGCGAGGAACGCTTGAAAGAAATGGAGGCGGAGATGGCCCT
GTTTGAGCAAGAAGTATTGGGAGCTCCGGTGACCGGAATCCCAACTGCTGTGCCTGCGGTGCCCACGGTA
GAAGCGATGCAGGTCCCCCCAGCTCCTGTGATCCGCCCAATTATCGCCACCAACACATACCAACAGGTCC
AACAGACTCTGGAGGCCAGGGCAGCTGCTGCAGCCACAGTTGTTCCTCCCATGGTGGGAGGCCCTCCTTT
TGTGGGCCCAGTTGGCTTTGGCCCTGCCGATCGTGGTCACCTGGACAGTCCTGAGGCTCGAGAGGCCATG
TTCCTGAGGCGAGCAGCTGTGGCCCCTCAGAGGGCCCCTATCCTGCGTCCTGCCTTCGTCCCCCACGTGC
TACAGAGAGCAGATTCTGCCCTTTCCTCTGCAGCTGGTGGCCCCCGACCTATGGCCCTGAGGCCTCCACA
CCAGGCCCTGGTTGGACCCCCTCTGCCTGGGCCTCCTGGACCACCCATGATGCTGCCACCAATGGCTCGG
GCACCTGGACCACCCCTGGGTTCTATGGCTGCTCTGAGACCTCCCCTGGAAGAGCCAGCAGCTCCACGAG
AGCTAGGCCTAGGCCTTGGTTTGGGCCTGAAGGACAAGGAAGAGGCAGTAGTGGCCGCAGCGGCTGGGCT
GGAGGAAGCTAGCGCAGCAGTGGCAGTGGGGGCAGGAGGAGCCCCAGCTGGGCCTGCAGTCATTGGCCCC
AGCCTCCCGCTGGCCCTCGCCATGCCCTTGCCTGAGCCTGAGCCCTTGCCCCTCCCACTGGAGGTGGTAC
GTGGCCTGCTGCCTCCGCTGAGAATTCCTGAGCTCTTGTCTCTCCGTCCACGACCTCGGCCCCCTCGGCC
TGAGCCTCCTCCTGGCCTCATGGCCCTAGAGGTGCCAGAGCCACTGGGTGAAGACAAGAAGAAAGGCAAG
CCAGAGAAACTGAAACGCTGCATTCGCACAGCAGCGGGGAGCAGCTGGGAGGACCCCAGCCTGCTGGAGT
GGGATGCCGATGACTTCCGGATCTTCTGCGGGGATCTGGGCAATGAGGTGAACGATGACATCTTGGCACG
AGCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCTAAGGTGATCCGTGACAAGCGCACAGGCAAAACCAAG
GGCTATGGCTTTGTCAGCTTCAAAGACCCCAGTGACTATGTGCGCGCCATGCGAGAGATGAATGGGAAGT
ATGTGGGCTCACGCCCCATCAAGCTTCGCAAAAGCATGTGGAAGGACCGGAACCTGGATGTGGTCCGTAA
GAAGCAGAAGGAAAAGAAAAAGTTGGGCCTCAGATAG

Translation (478 aa):
MASAMAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTV
EAMQVPPAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPADRGHLDSPEAREAM
FLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMAR
APGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKDKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGP
SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGK
PEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTK
GYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH