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Report for CCDS52142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52142.1 Public Mus musculus 7 Arhgef1 23 108 98 CCDS HistoryNCBI Gene:16801Re-query CCDS DB by CCDS ID:52142.1Re-query CCDS DB by GeneID:16801See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098683.10 ENSMUSP00000096280.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098683.10Link to Ensembl Protein Viewer:ENSMUSP00000096280.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098683Re-query CCDS DB by Protein ID:ENSMUSP00000096280
Original member NCBI NM_001130150.1 NP_001123622.1 Updated not alive Link to Nucleotide Sequence:NM_001130150.1Link to Protein Sequence:NP_001123622.1Re-query CCDS DB by Nucleotide ID:NM_001130150Re-query CCDS DB by Protein ID:NP_001123622
Current member NCBI NM_001130150.2 NP_001123622.1 Accepted alive Link to Nucleotide Sequence:NM_001130150.2Link to Protein Sequence:NP_001123622.1Re-query CCDS DB by Nucleotide ID:NM_001130150Re-query CCDS DB by Protein ID:NP_001123622Link to BLAST:NP_001123622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123622.1 979 Q61210-5 979 100% 0 0

Chromosomal Locations for CCDS 52142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24907734 24907757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24907854 24907934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24908311 24908424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24912057 24912155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24912310 24912352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24912555 24912801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24913140 24913169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24913399 24913498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24913620 24913716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24916018 24916053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24916804 24916941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24917895 24918000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24918520 24918531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24919184 24919351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24919631 24919776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24921871 24922017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24922325 24922407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24922541 24922666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24922807 24922921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24923010 24923110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24923364 24923441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24923659 24923734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24923803 24923970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24924796 24924883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24924976 24925062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24925252 24925319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24925401 24925487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24925784 24925947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24926024 24926123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24926240 24926250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2940 nt):
ATGGGAGAAGTCGCCGGAGGGGCGGCCCCAGGGCCTCCCCGGTCTGGCCTGGTGTCCATCATCATCGGGG
CGGAGGATGAGGATTTTGAGAACGAGCTGGAGGCGAACTCAGAAGATCAAAACAGCCAGTTCCAGAGCCT
AGAGCAAGTGAAGCGCCGCCCTGCCCACCTCATGGCCCTCCTGCAGCATGTGGCCCTGCAGTTCGAGCCA
GGACCACTGCTCTGCTGCCTGCATGCAGACATGCTGAGCTCTCTGGGCCCCAAAGAAGCCAAGAAGGCCT
TCCTTGACTTCTATCACAGTTTCCTGGAGAAGACTGCGGTTCTACGGGTGCCGGTCCCTCCCAGTGTCGC
TTTTGAACTTGATCGTACTCGACCTGATCTGATCTCTGAGGATGTCCAGAGGCGGTTCATACAAGAGGTG
GTGCAGAGCCAGCAGGCAGCCGTGAGCCGTCAGCTAGAGGACTTCCGCTCCAAGCGGCTCATGGGCATGA
CGCCCTGGGAGCAGGAACTGAGCCTGCTGGAGCCCTGGATTGGGAAAGACCGAGGCAACTATGAGGCCCG
GGAGCGGCATGTTGCGGAGCGGCTGCTGTCCCACCTGGAGGAGACCCAGCATACCATCTCTACAGATGAA
GAGAAAAGTGCTGCTGTGGTCACTGCCATCAGCCTGTATATGCGCCACCTTGGAGTCCGGACCAAGAGTG
GGGACAAGAAGTCGGGAAGGAACTTCTTCCGGAAAAAGGTGATGGGGAATCGGAGGTCAGACGAACCCCC
AAAGACAAAGAAAGGGCTGAGCAGTATCCTAGATCCTGCACGTTGGAACCGGGGAGAGCCATCCGCTCCA
GATTGTCGACATCTAAAGGTCGAGGCTGATGAGAAGCCAGGCCCTGCAGACCGGAAGGGAGGCCTGGGTA
TGTCTTCTCGGGACAGGACTGTTGGGACTCCTGGACAGGACAACCCAGGAGTCTCCCTGCACCCTCTGTC
TACAGACAGCGTCGACTCCCGGGAACCAGGCGTGGATACCCCGCAGGAGCCAGGGGATACACCCCCACAG
GGCCCTACCAGCCTGGAGCCCCTGGCGCCCCCAGAGAGCACAGAGGACAATGGCGAGACTGAGAGAAGGT
GGAAGAGGCTATCAGGGCGTCTAGGGCGCTCAGAGAGCCTGCGGGTGAGTGACCGCCGCCGGCCTTCCCG
GGGCAGCCTCGGGGCTAAGGGCCGGGGTGGGGGCCGTTCCCGGAGCGACGTGGACATGGACCCGGGCTCC
GCCACGGCCGTGCTTGGCCCCACCCGACGAGCCACCCCTGAGCCCGGAGATGATGGGGAGCCAGGACGGT
CAGGCCTGGAACTGGAACCAGAAGAACCTCCTGGGTGGAGGGAACTCGTGCCCCCAGACACCCTGCTCAG
TCTGCCCAAGAGCCAAGTGAAGCGGCAAGAGGTCATCAGCGAGCTGCTCGTGACTGAGGCAGCTCACGTG
CGCATGCTACGGGTACTGCATGACCTCTTCTACCAGCCCATGGCGGATGGAGGCTTCTTCCCTCTGGACG
AGCTGCAGAACATCTTCCCGAGCCTGGATGAGCTCATCGAGGTGCACTCCCTGTTCCTCGATCGCTTGAT
GAAGCGGAGACAAGAGAGTGGCTACCTCATTGAGGAGATCGGCGATGTGCTACTGGCCCGGTTCGATGGT
GCTGAGGGCTCATGGTTCCAGAAGATCTCCTCCCGCTTCTGCAGCCGCCAGTCGTTCGCTCTAGAGCAGC
TCAAAGCCAAGCAGCGCAAGGAGCCTCGGTTCTGTGCCTTTGTGCAGGAAGCTGAGAGCCGCCCGAGATG
CCGGCGCCTACAGTTAAAGGACATGATCCCCACTGAGATGCAGCGACTGACCAAGTACCCACTGCTGCTA
CAGAGCATCGGGCAGAACACAGAGGAGTCTACAGAACGAGGGAAAGTGGAGCTTGCAGCTGAGTGCTGCC
GGGAGATTCTGCACCATGTCAATCAAGCCGTCCGTGACATGGAGGACCTGCTGCGGCTCAAGGATTACCA
GCGGCGCCTGGACTTGACTCACCTACGGCAGAGCAGTGACCCTATGCTGAGCGAGTTCAAGAACCTGGAC
ATCACTAAGAAGAAGTTGGTCCATGAAGGCCCCCTCACGTGGCGAGTGACCAAAGACAAAGCTATAGAAG
TGCACGTGCTCTTGCTGGACGACCTGCTGCTGCTGCTCCAGCGCCAGGACGAGAGGCTGCTGCTCAAGTC
CCACAGCCGGACGCTGACACCTACCCCCGATGGCAAGACCATGCTGCGGCCGGTGCTCCGGCTCACCTCT
GCCATGACCCGAGAGGTGGCCACTGATCACAAAGCTTTCTACGTCATTTTTACCTGGGACCAGGAGGCCC
AGATATATGAGCTGGTGGCACAGACATCTTCGGAACGCAAAAACTGGTGTAACCTCATCACTGAGACTGC
TGGATCCCTGAAGGTCCCTGCCCCTGCCTCCCGCCTCAAACCCCGGCCCAGCCCAAGCAGCATCCGAGAA
CCCCTGCTCAGCAGCTCTGAGAATGGCACTGGAGGCGCAGAGATGGCTCCAGCTGATGCCAGGACAGAGC
GGCTCCTCAATGACCTCCTGCCCTTCTGCAGACCAGGCCCAGAGGGCCAGCTTGCTGCCACAGCCCTTCA
GAAAGTACTGTCCCTGAAGCAGATCCTGCTAAGCACTGAGGAAGACAGTGGAGCGGGGCCTCCCCGCGAT
GGGGATGGGGTGCCTGGTGGTAGGGCCCCCGGCCCAGTGCACACCCAGGAGATTGAGGAAAACTTGCTTA
GCTTAGAGGTGGCCATCAGACAACTGGAGGAGTTGGAAGAGGAATTTTGTCGCCTAAGACCCCTCCTGTC
CCAGCTTGGGGGGACTCTGTCCCCCAACCTGGCTGCACCTGAACGCTCTGCTCAGACAGGCCTTTCATGA

Translation (979 aa):
MGEVAGGAAPGPPRSGLVSIIIGAEDEDFENELEANSEDQNSQFQSLEQVKRRPAHLMALLQHVALQFEP
GPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSVAFELDRTRPDLISEDVQRRFIQEV
VQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGNYEARERHVAERLLSHLEETQHTISTDE
EKSAAVVTAISLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPPKTKKGLSSILDPARWNRGEPSAP
DCRHLKVEADEKPGPADRKGGLGMSSRDRTVGTPGQDNPGVSLHPLSTDSVDSREPGVDTPQEPGDTPPQ
GPTSLEPLAPPESTEDNGETERRWKRLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPGS
ATAVLGPTRRATPEPGDDGEPGRSGLELEPEEPPGWRELVPPDTLLSLPKSQVKRQEVISELLVTEAAHV
RMLRVLHDLFYQPMADGGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDG
AEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLL
QSIGQNTEESTERGKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLTHLRQSSDPMLSEFKNLD
ITKKKLVHEGPLTWRVTKDKAIEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTS
AMTREVATDHKAFYVIFTWDQEAQIYELVAQTSSERKNWCNLITETAGSLKVPAPASRLKPRPSPSSIRE
PLLSSSENGTGGAEMAPADARTERLLNDLLPFCRPGPEGQLAATALQKVLSLKQILLSTEEDSGAGPPRD
GDGVPGGRAPGPVHTQEIEENLLSLEVAIRQLEELEEEFCRLRPLLSQLGGTLSPNLAAPERSAQTGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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