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Report for CCDS52027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52027.1 Public Mus musculus 7 Pla2g4c 23 108 98 CCDS HistoryNCBI Gene:232889Re-query CCDS DB by CCDS ID:52027.1Re-query CCDS DB by GeneID:232889See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108528.8 ENSMUSP00000104168.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108528.8Link to Ensembl Protein Viewer:ENSMUSP00000104168.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108528Re-query CCDS DB by Protein ID:ENSMUSP00000104168
Original member Current member EBI ENSMUST00000167232.7 ENSMUSP00000127060.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167232.7Link to Ensembl Protein Viewer:ENSMUSP00000127060.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167232Re-query CCDS DB by Protein ID:ENSMUSP00000127060
Original member Current member NCBI NM_001168504.1 NP_001161976.1 Accepted alive Link to Nucleotide Sequence:NM_001168504.1Link to Protein Sequence:NP_001161976.1Re-query CCDS DB by Nucleotide ID:NM_001168504Re-query CCDS DB by Protein ID:NP_001161976Link to BLAST:NP_001161976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161976.1 607 Q64GA5-2 607 100% 0 0

Chromosomal Locations for CCDS 52027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13325740 13325777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13329648 13329762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13329971 13330107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13335193 13335382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13337737 13337857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13339601 13339741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13340613 13340666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13342391 13342432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13343373 13343516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13343891 13344040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13344437 13344532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13345997 13346151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13348214 13348385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13356176 13356326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13357026 13357143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGAGCTGTGCCGAGTCTCCCAAATCACTACATAAGCGAAGCTCTGGGGTCTGCCCTGCCACTAGACTCC
AGGAAGCAGAAAAGGCAGCTGTGCACAAACGCAGTCCCAAGGTTTTGGAGGCTCTACGAAAGCTCAACAT
CCAAGCTGACCAGGCTCCAGTCATTGCTGTCTTGGGCTCTGGCGGGGGGCTGCGGGCCCACATCGCTTGT
CTTGGTGTGCTGAGTGAGCTGAAAGAACTTGGCCTGTTGGATGCTGTCACATACCTCGCAGGGGTCTCTG
GGTCCACTTGGGCACTGTCTTCACTCTACACCAAGAATGGAAATATGGAAGGGATAGAAGAGGAGCTGAA
ACATCGGTATGAGAAGAATGAGTGGGACTTTCATGAGAGCCTGGAGAAAGCCATCCAGGCATCAAAGAGG
GAGAATTACTCCCTGACTGACTTTTGGGCCTATTTAATTGTTTCCAGGCAAATCAGAGAACTTCAGGATT
CGAATTTGTCCAGTCTAAAGAAGCAAGTGGAAGAAGGAGTGCTGCCCTATCCCATCTTTGCAGCCATTGA
TGAGGACCTTCTGGCTGATTGGAGGGAGAGGAAAACTCAGAATTCCTGGTTTGAATTCACTCCTCATCAT
GCTGGCTACCCTGCACTTGGGGCTTATGTCCCCATCACAGAGTTTGGAAGCAGATTTGAGAATGGGAAAC
TGGTTAAATCTGAGCCTGAGAGAGATTTGACTTTCCTGAGAGGTTTATGGGGAAGTGCTTTTGCTGATAT
TAAAGAAATTAAGAATTATATTTTGAACTACTTCAGGAACCCCTTTGGAAAATTGAAGTTTATAGAAGGA
CCAGTGACATACTCAGAAGCACCAAGGATGAATGTGGATGCAATGCTCTTGGATTTAGTGATGGCTTATT
TCACAGATATGAATGACCCCAGCATCAAGGATAAGCTCTGTGCCCTTCAGCAGGCTCTGGGTACTGAGAC
AGATGAATTTGGCATAGAGATGGCTGAGATCATCCAGAATTGGAATGAGACCTCCGCAGAGAAGAAGGAG
CAGTTTCTCGACCATCTGTTGGATCGCTTCAAGAAGACACAAGAAGACACCACCACATACAGTTTGATGA
ACTGGAACACGGGTCTAGTTTGGGACCGTTGCGTTTTTGTGAATGAAACTCGCAAGTGTGTCTCCAAATG
GCAGTGGGGAACTGTTTACAACTTCCTCTATAAACACGGTAAAATTGCAGATGAGACCATGTGCAGCCGA
GAGCTTCTCCATCTGGTGGATGCTGGTTTTGCCATCAACACTCCCTATCCACTTGTTCTGCCTCCTGTGC
GTGAAACTCACCTCATCCTCTCATTTGACTTCAGTGCTGGGGACCCACTAGAGACCATCAGGGCCACAGC
AGACTACTGCCAACGCCATGAAATCCCCTTTCCTGAGGTGAGCGAGGATCAGCTGAAGGAATGGGCCAAA
GCCCCAGCAAGCTGCTATGTCCTCAGAGGGGAAACAGGACCTGTTGTCATGCACTTTACTCTGTTCAACA
AAGACAACTGTGGAGATGATATTGAGACATGGAGAAAAAAATATGGGACAGTAAAACTATCTGACTCATA
CACACCAGACCTGGTGAGAGATTTGCTGAGGGTATCCAAGGAGAATGTGAAGAAAAACAAAATTAATATC
CTCAGTGAGATGAGGAAAGTGGCTGGGAATCCTGGGAACATCCCAAGAGTGAACAAGGAGGCCTGCTTGG
GAGACAGAGTGAAGGATCCCCAAGGCTCTCAGACTGTGGAGTTTAAGAAATCCCACAACATATCTAAGGA
TTAA

Translation (607 aa):
MSCAESPKSLHKRSSGVCPATRLQEAEKAAVHKRSPKVLEALRKLNIQADQAPVIAVLGSGGGLRAHIAC
LGVLSELKELGLLDAVTYLAGVSGSTWALSSLYTKNGNMEGIEEELKHRYEKNEWDFHESLEKAIQASKR
ENYSLTDFWAYLIVSRQIRELQDSNLSSLKKQVEEGVLPYPIFAAIDEDLLADWRERKTQNSWFEFTPHH
AGYPALGAYVPITEFGSRFENGKLVKSEPERDLTFLRGLWGSAFADIKEIKNYILNYFRNPFGKLKFIEG
PVTYSEAPRMNVDAMLLDLVMAYFTDMNDPSIKDKLCALQQALGTETDEFGIEMAEIIQNWNETSAEKKE
QFLDHLLDRFKKTQEDTTTYSLMNWNTGLVWDRCVFVNETRKCVSKWQWGTVYNFLYKHGKIADETMCSR
ELLHLVDAGFAINTPYPLVLPPVRETHLILSFDFSAGDPLETIRATADYCQRHEIPFPEVSEDQLKEWAK
APASCYVLRGETGPVVMHFTLFNKDNCGDDIETWRKKYGTVKLSDSYTPDLVRDLLRVSKENVKKNKINI
LSEMRKVAGNPGNIPRVNKEACLGDRVKDPQGSQTVEFKKSHNISKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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