NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51836.1 Public Mus musculus 6 Nfu1 23 108 98 CCDS HistoryNCBI Gene:56748Re-query CCDS DB by CCDS ID:51836.1Re-query CCDS DB by GeneID:56748See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032060.14 ENSMUSP00000032060.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032060.14Link to Ensembl Protein Viewer:ENSMUSP00000032060.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032060Re-query CCDS DB by Protein ID:ENSMUSP00000032060
Original member Current member EBI ENSMUST00000120240.7 ENSMUSP00000113637.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120240.7Link to Ensembl Protein Viewer:ENSMUSP00000113637.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000120240Re-query CCDS DB by Protein ID:ENSMUSP00000113637
Original member Current member NCBI NM_001170591.1 NP_001164062.1 Accepted alive Link to Nucleotide Sequence:NM_001170591.1Link to Protein Sequence:NP_001164062.1Re-query CCDS DB by Nucleotide ID:NM_001170591Re-query CCDS DB by Protein ID:NP_001164062Link to BLAST:NP_001164062.1

Chromosomal Locations for CCDS 51836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87009901 87009959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87012907 87013007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87015566 87015701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87019365 87019431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87020719 87020842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87023128 87023188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87025486 87025660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87028295 87028342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGCGGCGGCCGAGCGGGCATGGGGAGCAGCGGTCGGTGTAGTCCGGCTGTGCAGGCGGTTCTGTCATG
TAGCGACTCCACACACCTTTAAGAAACAACCTCTGCATCAATATGTACGGAGACCACTTTTCCCGCTGCG
CGCACCCTTGTGTAACACAGTACGATTCATGTTTATTCAAACACAAGACACCCCAAATCCCAACAGCTTA
AAGTTTATACCAGGAAAGCCGGTTCTTGAGACGAGGACCATGGATTTCCCCACCCCTGCTGCAGCTTTCC
GCTCCCCTCTGGCCAGGCAGTTATTCAGAATTGAAGGTGTGAAAAGCGTCTTCTTCGGACCAGATTTCAT
CACAGTCACAAAGGAGAATGAAGAGTTAGACTGGAATTTACTGAAACCAGACATTTATGCCACAATTATG
GACTTCTTTGCATCTGGCTTACCCCTAGTGACCGAGGAGACGCCTCCGCCTCCGGGAGAAGCAGGTAGCT
CTGAGGAAGATGACGAAGTCGTGGCAATGATTAAAGAACTGCTAGATACTAGAATAAGGCCAACTGTGCA
GGAGGATGGGGGCGACGTGATCTACAGGGGCTTTGAAGATGGCATCGTGCGGCTGAAGCTCCAGGGCTCC
TGCACCAGCTGCCCCAGCTCCATCATCACCCTGAAGAGCGGGATTCAGAACATGCTGCAGTTTTATATTC
CAGAAGTGGAAGGTGTGGAGCAGGTGATGGATGATGACGAATCAGATGAAAAAGAAGCAAATTCATCTTA
A

Translation (256 aa):
MAAAERAWGAAVGVVRLCRRFCHVATPHTFKKQPLHQYVRRPLFPLRAPLCNTVRFMFIQTQDTPNPNSL
KFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIM
DFFASGLPLVTEETPPPPGEAGSSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGS
CTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVMDDDESDEKEANSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH