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Report for CCDS51820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51820.1 Public Mus musculus 6 Tet3 23 108 98 CCDS HistoryNCBI Gene:194388Re-query CCDS DB by CCDS ID:51820.1Re-query CCDS DB by GeneID:194388See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089622.10 ENSMUSP00000087049.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089622.10Link to Ensembl Protein Viewer:ENSMUSP00000087049.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089622Re-query CCDS DB by Protein ID:ENSMUSP00000087049
Original member Current member NCBI NM_183138.2 NP_898961.2 Accepted alive Link to Nucleotide Sequence:NM_183138.2Link to Protein Sequence:NP_898961.2Re-query CCDS DB by Nucleotide ID:NM_183138Re-query CCDS DB by Protein ID:NP_898961Link to BLAST:NP_898961.2

Chromosomal Locations for CCDS 51820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83368042 83369825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83370383 83370719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83373194 83373331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83373783 83373872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83375750 83375900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83376766 83376974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83379872 83379965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83385985 83386075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83402667 83404779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5007 nt):
ATGGACTCAGGGCCAGTGTACCATGGAGATTCAAGGCAGCTAAGCACCTCAGGGGCGCCGGTCAATGGTG
CTAGAGAGCCCGCCGGACCCGGTCTTCTGGGAGCTGCGGGTCCTTGGCGGGTAGACCAGAAGCCCGACTG
GGAGGCTGCCTCAGGCCCCACTCACGCTGCTCGTCTGGAAGATGCCCACGACCTGGTGGCCTTTTCGGCC
GTGGCCGAAGCTGTGTCATCTTACGGGGCCCTTAGTACCCGGCTCTATGAAACCTTCAACCGTGAGATGA
GTCGTGAGGCTGGGAGCAACGGCAGGGGCCCCCGGCCTGAGAGCTGCTCTGAGGGCAGTGAAGACCTGGA
CACGCTGCAGACAGCCCTGGCCCTTGCAAGGCATGGCATGAAACCACCCAACTGCACCTGCGATGGCCCA
GAGTGCCCCGACTTCCTCGAGTGGCTGGAGGGCAAGATCAAGTCTATGGCCATGGAGGGAGGGCAGGGGC
GGCCTAGGCTCCCAGGCGCTCTGCCTCCCAGTGAGGCTGGCCTCCCAGCCCCTAGCACCAGACCGCCACT
CCTTAGCTCTGAGGTCCCCCAGGTACCTCCCCTGGAGGGCCTGCCTCTGTCCCAGAGCGCGCTGAGCATT
GCCAAGGAAAAAAACATCAGCCTGCAGACAGCCATCGCCATCGAGGCCCTCACACAGCTCTCCTCCGCCC
TCCCTCAGCCTTCTCATTCCACCTCCCAGGCTTCTTGTCCACTCCCTGAGGCCTTGTCCCCTTCTGCCCC
TTTCAGGTCTCCCCAGTCCTACCTCCGGGCCCCCTCATGGCCTGTGGTTCCCCCAGAGGAACATCCATCC
TTTGCTCCTGACAGCCCAGCCTTCCCTCCAGCAACCCCAAGACCTGAGTTTTCTGAAGCGTGGGGCACTG
ACACCCCCCCAGCGACACCCCGGAACTCCTGGCCTGTACCTCGCCCAAGCCCTGACCCTATGGCAGAACT
GGAGCAGCTATTGGGCAGCGCCAGTGATTACATCCAGTCAGTATTCAAGCGGCCTGAGGCCCTGCCCACC
AAGCCCAAGGTCAAGGTTGAGGCCCCCTCTTCTTCCCCTGCTCCGGTACCATCTCCTATTTCTCAGAGGG
AGGCTCCCCTGCTGTCTTCAGAGCCTGACACCCACCAGAAGGCCCAGACAGCCCTTCAGCAACATCTTCA
TCACAAGCGCAACCTATTCTTGGAACAGGCCCAAGATGCCTCCTTCCCTACTTCCACAGAGCCTCAGGCT
CCTGGTTGGTGGGCCCCTCCCGGCTCACCTGCCCCAAGGCCTCCTGACAAACCACCCAAGGAAAAGAAAA
AGAAGCCCCCCACCCCTGCTGGAGGTCCCGTGGGAGCAGAGAAAACCACCCCTGGGATCAAGACCAGTGT
CCGAAAGCCCATTCAGATCAAGAAATCCAGGTCCAGGGACATGCAGCCCCTCTTCCTGCCTGTTAGGCAG
ATTGTTCTGGAAGGGCTAAAACCCCAAGCCTCAGAAGGACAGGCACCGTTACCCGCCCAGCTCTCTGTCC
CACCTCCTGCCTCCCAGGGTGCTGCATCCCAGAGCTGTGCCACCCCTCTAACCCCAGAACCTTCTCTTGC
GCTATTTGCACCTAGTCCCTCCGGGGACAGCCTGCTGCCCCCTACTCAGGAAATGAGATCCCCCAGCCCC
ATGGTAGCCCTGCAGTCAGGCTCCACTGGTGGCCCCCTTCCCCCTGCCGATGACAAGCTGGAGGAGCTCA
TCCGGCAATTTGAGGCTGAATTTGGGGATAGCTTTGGGCTTCCCGGCCCACCTTCGGTGCCCATTCAAGA
ACCTGAAAACCAATCAACATGTCTCCCAGCTCCGGAGAGCCCTTTTGCCACCCGCTCCCCCAAGAAGATC
AAGATCGAGTCCTCAGGGGCCGTGACTGTGCTCTCAACTACCTGCTTCCATTCAGAAGAGGGGGGACAGG
AGGCCACGCCCACCAAGGCTGAGAACCCACTCACACCAACCCTCAGTGGCTTCTTGGAGTCACCTCTAAA
GTACCTAGACACACCTACTAAGAGTCTGCTGGACACACCGGCCAAGAAGGCTCAGTCCGAGTTCCCTACC
TGCGATTGTGTCGAACAAATAGTGGAGAAAGATGAAGGCCCATATTACACTCACCTGGGATCTGGCCCCA
CAGTAGCTTCTATCCGGGAACTCATGGAGGATCGGTATGGAGAAAAGGGGAAAGCTATCCGGATTGAGAA
GGTCATCTACACGGGCAAGGAGGGGAAGAGTTCTCGAGGCTGTCCCATCGCCAAGTGGGTGATCCGAAGA
CACACACTGGAGGAGAAGCTGCTGTGCCTGGTGCGGCATCGGGCAGGCCACCATTGTCAGAACGCCGTGA
TTGTTATCTTGATCCTGGCCTGGGAGGGCATCCCTCGAAGCCTTGGGGACACCCTCTACCAGGAGCTTAC
TGATACCCTCCGGAAGTATGGCAACCCTACCAGCCGGAGATGTGGCCTCAATGATGACCGGACCTGTGCT
TGCCAAGGCAAAGACCCTAACACCTGCGGTGCCTCCTTCTCCTTCGGCTGTTCCTGGAGCATGTACTTCA
ACGGCTGCAAATATGCTCGGAGCAAGACGCCACGAAAGTTCCGCCTCACGGGAGACAATCCGAAGGAGGA
GGAGGTGCTCCGGAATAGCTTTCAGGATCTGGCCACTGAAGTTGCTCCCCTCTACAAGCGGCTCGCACCC
CAGGCCTATCAGAACCAGGTGACCAATGAGGATGTGGCGATCGACTGCCGCCTGGGGCTGAAGGAAGGGA
GACCCTTCTCAGGGGTCACAGCCTGCATGGACTTCTGTGCCCACGCCCACAAGGACCAACATAACCTCTA
CAATGGGTGCACTGTGGTCTGCACCCTGACCAAGGAAGACAATCGCTGCGTGGGCCAGATCCCTGAGGAC
GAGCAACTGCACGTGCTGCCCCTCTACAAGATGGCCAGCACGGATGAGTTTGGCAGCGAGGAAAACCAGA
ACGCCAAGGTCAGTAGTGGGGCCATCCAGGTGCTCACAGCATTCCCCAGAGAGGTCCGGCGGCTGCCTGA
GCCTGCCAAGTCCTGCCGCCAACGGCAGCTGGAAGCCAGGAAGGCGGCGGCCGAGAAGAAGAAGCTGCAG
AAGGAGAAACTGAGCACGCCAGAGAAGATCAAGCAGGAGGCCCTGGAGTTGGCTGGAGTCACCACTGACC
CAGGCCTGTCTCTGAAGGGTGGATTGTCCCAGCAAAGCCTGAAGCCCTCCCTCAAGGTGGAGCCTCAGAA
CCACTTTAGCTCCTTTAAGTACAGTGGCAATGCGGTGGTGGAAAGCTACTCGGTGCTGGGCAGCTGCCGG
CCCTCCGACCCCTACAGCATGAGCAGTGTGTATTCCTACCATTCGCGCTATGCACAGCCTGGCCTGGCCT
CTGTCAACGGCTTCCACTCCAAGTACACACTTCCCTCCTTTGGCTACTATGGCTTTCCATCAAGCAACCC
TGTCTTCCCCTCCCAGTTCCTGGGTCCCAGTGCCTGGGGGCATGGGGGCAGTGGAGGCAGTTTTGAGAAG
AAGCCAGACCTCCATGCTCTACACAACAGCCTGAACCCAGCCTACGGTGGTGCTGAGTTTGCCGAGCTGC
CAGGTCAGGCTGTTGCCACAGACAACCACCACCCCATCCCTCACCACCAGCAGCCTGCTTACCCAGGCCC
CAAGGAATATCTGCTACCCAAGGTCCCCCAGCTCCACCCAGCATCCAGGGACCCCTCTCCCTTTGCTCAG
AGTTCCAGTTGCTACAACAGATCCATCAAGCAAGAGCCAATAGACCCTCTGACCCAGGCTGAGTCCATTC
CCAGAGACTCTGCTAAGATGAGTAGAACACCCTTGCCGGAAGCATCTCAGAATGGGGGACCCAGTCATCT
GTGGGGACAGTACTCAGGAGGCCCAAGCATGTCCCCGAAGAGGACTAACAGTGTAGGTGGCAACTGGGGC
GTGTTCCCTCCGGGGGAGAGCCCTACCATTGTTCCCGACAAGCTCAATTCTTTTGGGGCCAGCTGTCTCA
CTCCTTCACACTTCCCAGAAAGCCAGTGGGGACTGTTCACTGGTGAAGGCCAGCAGTCGGCCCCCCATGC
TGGAGCACGGCTTCGAGGCAAGCCATGGAGCCCCTGCAAGTTTGGGAACGGCACCTCTGCCTTGACTGGT
CCCAGCCTAACTGAGAAGCCATGGGGGATGGGAACCGGGGATTTCAACCCCGCCCTGAAAGGTGGACCTG
GGTTCCAAGACAAGTTGTGGAATCCTGTGAAGGTGGAGGAGGGCAGGATTCCCACACCGGGGGCCAACCC
GCTAGACAAAGCCTGGCAAGCCTTTGGCATGCCCTTGAGCTCCAACGAGAAGCTATTTGGGGCCCTGAAG
TCAGAGGAGAAACTGTGGGATCCCTTCAGCCTGGAGGAGGGGACAGCTGAGGAGCCCCCCAGCAAGGGGG
TGGTGAAGGAAGAGAAGAGTGGACCCACAGTGGAAGAGGACGAGGAGGAACTGTGGTCGGACAGTGAACA
CAACTTCCTGGATGAGAACATAGGCGGGGTGGCCGTGGCCCCCGCCCATTGCTCCATCCTCATCGAGTGT
GCCCGGCGAGAGCTGCATGCCACCACTCCACTCAAAAAACCCAACCGCTGCCACCCCACCCGCATCTCGC
TGGTCTTCTACCAACACAAGAACCTCAACCAGCCCAACCACGGGCTGGCGCTCTGGGAGGCCAAGATGAA
GCAGCTGGCGGAACGGGCGCGGCAGCGGCAAGAGGAGGCCGCACGCCTGGGCCTGGGCCAGCAGGAGGCC
AAGCTCTACGGGAAGAAGCGAAAATGGGGGGGTGCTATGGTGGCTGAGCCCCAGCACAAAGAAAAGAAGG
GGGCTATCCCTACCCGGCAGGCGCTGGCCATGCCCACAGACTCCGCGGTCACCGTGTCCTCTTACGCCTA
CACAAAGGTCACTGGCCCCTACAGCCGCTGGATCTAG

Translation (1668 aa):
MDSGPVYHGDSRQLSTSGAPVNGAREPAGPGLLGAAGPWRVDQKPDWEAASGPTHAARLEDAHDLVAFSA
VAEAVSSYGALSTRLYETFNREMSREAGSNGRGPRPESCSEGSEDLDTLQTALALARHGMKPPNCTCDGP
ECPDFLEWLEGKIKSMAMEGGQGRPRLPGALPPSEAGLPAPSTRPPLLSSEVPQVPPLEGLPLSQSALSI
AKEKNISLQTAIAIEALTQLSSALPQPSHSTSQASCPLPEALSPSAPFRSPQSYLRAPSWPVVPPEEHPS
FAPDSPAFPPATPRPEFSEAWGTDTPPATPRNSWPVPRPSPDPMAELEQLLGSASDYIQSVFKRPEALPT
KPKVKVEAPSSSPAPVPSPISQREAPLLSSEPDTHQKAQTALQQHLHHKRNLFLEQAQDASFPTSTEPQA
PGWWAPPGSPAPRPPDKPPKEKKKKPPTPAGGPVGAEKTTPGIKTSVRKPIQIKKSRSRDMQPLFLPVRQ
IVLEGLKPQASEGQAPLPAQLSVPPPASQGAASQSCATPLTPEPSLALFAPSPSGDSLLPPTQEMRSPSP
MVALQSGSTGGPLPPADDKLEELIRQFEAEFGDSFGLPGPPSVPIQEPENQSTCLPAPESPFATRSPKKI
KIESSGAVTVLSTTCFHSEEGGQEATPTKAENPLTPTLSGFLESPLKYLDTPTKSLLDTPAKKAQSEFPT
CDCVEQIVEKDEGPYYTHLGSGPTVASIRELMEDRYGEKGKAIRIEKVIYTGKEGKSSRGCPIAKWVIRR
HTLEEKLLCLVRHRAGHHCQNAVIVILILAWEGIPRSLGDTLYQELTDTLRKYGNPTSRRCGLNDDRTCA
CQGKDPNTCGASFSFGCSWSMYFNGCKYARSKTPRKFRLTGDNPKEEEVLRNSFQDLATEVAPLYKRLAP
QAYQNQVTNEDVAIDCRLGLKEGRPFSGVTACMDFCAHAHKDQHNLYNGCTVVCTLTKEDNRCVGQIPED
EQLHVLPLYKMASTDEFGSEENQNAKVSSGAIQVLTAFPREVRRLPEPAKSCRQRQLEARKAAAEKKKLQ
KEKLSTPEKIKQEALELAGVTTDPGLSLKGGLSQQSLKPSLKVEPQNHFSSFKYSGNAVVESYSVLGSCR
PSDPYSMSSVYSYHSRYAQPGLASVNGFHSKYTLPSFGYYGFPSSNPVFPSQFLGPSAWGHGGSGGSFEK
KPDLHALHNSLNPAYGGAEFAELPGQAVATDNHHPIPHHQQPAYPGPKEYLLPKVPQLHPASRDPSPFAQ
SSSCYNRSIKQEPIDPLTQAESIPRDSAKMSRTPLPEASQNGGPSHLWGQYSGGPSMSPKRTNSVGGNWG
VFPPGESPTIVPDKLNSFGASCLTPSHFPESQWGLFTGEGQQSAPHAGARLRGKPWSPCKFGNGTSALTG
PSLTEKPWGMGTGDFNPALKGGPGFQDKLWNPVKVEEGRIPTPGANPLDKAWQAFGMPLSSNEKLFGALK
SEEKLWDPFSLEEGTAEEPPSKGVVKEEKSGPTVEEDEEELWSDSEHNFLDENIGGVAVAPAHCSILIEC
ARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHGLALWEAKMKQLAERARQRQEEAARLGLGQQEA
KLYGKKRKWGGAMVAEPQHKEKKGAIPTRQALAMPTDSAVTVSSYAYTKVTGPYSRWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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