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Report for CCDS51790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51790.1 Public Mus musculus 6 Kbtbd2 23 108 98 CCDS HistoryNCBI Gene:210973Re-query CCDS DB by CCDS ID:51790.1Re-query CCDS DB by GeneID:210973See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114321.1 ENSMUSP00000109960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114321.1Link to Ensembl Protein Viewer:ENSMUSP00000109960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114321Re-query CCDS DB by Protein ID:ENSMUSP00000109960
Original member Current member EBI ENSMUST00000114323.7 ENSMUSP00000109962.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114323.7Link to Ensembl Protein Viewer:ENSMUSP00000109962.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114323Re-query CCDS DB by Protein ID:ENSMUSP00000109962
Original member Current member NCBI NM_001362209.1 NP_001349138.1 Accepted alive Link to Nucleotide Sequence:NM_001362209.1Link to Protein Sequence:NP_001349138.1Re-query CCDS DB by Nucleotide ID:NM_001362209Re-query CCDS DB by Protein ID:NP_001349138Link to BLAST:NP_001349138.1
Original member Current member NCBI NM_001362210.1 NP_001349139.1 Accepted alive Link to Nucleotide Sequence:NM_001362210.1Link to Protein Sequence:NP_001349139.1Re-query CCDS DB by Nucleotide ID:NM_001362210Re-query CCDS DB by Protein ID:NP_001349139Link to BLAST:NP_001349139.1
Original member Current member NCBI NM_001362211.1 NP_001349140.1 Accepted alive Link to Nucleotide Sequence:NM_001362211.1Link to Protein Sequence:NP_001349140.1Re-query CCDS DB by Nucleotide ID:NM_001362211Re-query CCDS DB by Protein ID:NP_001349140Link to BLAST:NP_001349140.1
Original member Current member NCBI NM_001362212.1 NP_001349141.1 Accepted alive Link to Nucleotide Sequence:NM_001362212.1Link to Protein Sequence:NP_001349141.1Re-query CCDS DB by Nucleotide ID:NM_001362212Re-query CCDS DB by Protein ID:NP_001349141Link to BLAST:NP_001349141.1
Original member Current member NCBI NM_145958.2 NP_666070.2 Accepted alive Link to Nucleotide Sequence:NM_145958.2Link to Protein Sequence:NP_666070.2Re-query CCDS DB by Nucleotide ID:NM_145958Re-query CCDS DB by Protein ID:NP_666070Link to BLAST:NP_666070.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349138.1 623 G3X9X1 623 100% 0 0
NP_001349139.1 623 G3X9X1 623 100% 0 0
NP_001349140.1 623 G3X9X1 623 100% 0 0
NP_001349141.1 623 G3X9X1 623 100% 0 0
NP_666070.2 623 G3X9X1 623 100% 0 0

Chromosomal Locations for CCDS 51790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56778878 56780413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56781801 56781966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56789219 56789388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGTCCACTCAAGAGGAAAGGCAGATCAATACCGAATATGCTGTGTCCTTATTGGAACAGTTGAAACTGT
TTTATGAACAACAGTTATTTACTGACATAGTGTTAATTGTTGAGGGCACTGAATTCCCTTGTCATAAGAT
GGTTCTTGCAACATGTAGCTCCTATTTCAGGGCCATGTTCATGAGTGGACTAAGTGAAAGCAAGCAGACA
CATGTACACCTGAGGAATGTGGACGCTGCCGCCTTGCAGATGATAATAGCTTACGCGTACACAGGGAACT
TGGCAGTAAACGACAGCACTGTGGAGCAGCTCTATGAAACAGCTTGCTTCCTGCAGGTAGAAGATGTGTT
ACAGCGTTGCCGAGAATATTTAATTAAAAAAATTAATGCAGAGAACTGTGTGCGGCTGCTGAGTTTTGCT
GACCTCTTCAGTTGTGAAGAATTAAAGCAGAGTGCAAAGAGGATGGTGGAGCACAAGTTCACGGCTGTGT
ACCGCCAGGAAGCCTTCATGCAGCTGTCCCACGACCTCCTCATAGACATCCTCAGCAGCGACAACTTAAA
TGTAGAAAAGGAGGAAACCGTGCGAGAGGCTGCCATGCTCTGGCTAGAGTACAACACAGAGTCACGATCC
CAGTATTTGTCTTCAGTTCTTAGCCAGATCAGAATTGATGCTCTTTCAGAAGTCACACAAAGAGCTTGGT
TTCAAGGTCTCCCACCCAACGATAAGTCTGTTGTGGTTCAGGGTCTTTATAAGTCTATGCCCAAGTTCTT
CAAACCCAGACTTGGGATGACTAAGGAGGAAATGATGATTTTCATTGAAGCATCCTCAGAAAACCCTTGT
AGTCTTTACTCTTCTGTCTGTTATAGCCCCCAGGCAGAAAAAGTTTACAAGTTATGCAGCCCACCCGCTG
ATTTGCATAAGGTTGGGACAGTTGTAACTCCGGATAATGATATTTACATAGCAGGGGGCCAAGTGCCCTT
GAAAAACACAAAAACAAATCACAGTAAAACAAGTAAACTGCAGACTGCCTTCCGAACTGTGAATTGCTTT
TACTGGTTTGATGCACAACAAAATACCTGGTTTCCAAAGACACCAATGCTTTTTGTCCGTGTGAAGCCAT
CTTTGGTTTGCTGTGAAGGCTATATCTATGCAATCGGAGGAGATAGTGTTGGTGGAGAACTTAACCGGAG
GACTGTAGAAAGATACGACACTGAGAAGGATGAGTGGACAATGGTGAGCCCTTTGCCTTGTGCATGGCAG
TGGAGTGCAGCAGTTGTAGTTCACGACTGCATCTATGTGATGACATTAAACCTCATGTACTGTTACTTTC
CAAGATCTGACTCATGGGTAGAAATGGCCATGAGGCAGACTAGCAGATCTTTTGCTTCAGCTGCAGCTTT
TGGTGATAAAATTTTCTATATTGGAGGGTTGCATATTGCTACCAATTCTGGCATAAGACTCCCCTCTGGC
ACTGTAGATGGGTCTTCAGTAACTGTGGAAATTTATGATGTGAATAAAAATGAATGGAAGATGGCTGCCA
ACATCCCTGCTAAAAGGTATTCTGATCCCTGTGTTAGAGCTGTTGTGATCTCAAATTCTCTTTGTGTGTT
TATGCGAGAAACCCACTTAAATGAACGAGCTAAGTATGTCACCTACCAGTATGATTTGGAACTTGACCGG
TGGTCTCTGCGGCAGCATATATCTGAACGTGTACTGTGGGACCTAGGGAGAGATTTTCGGTGCACTGTGG
GGAAACTTTATCCATCCTGTCTTGAAGAATCTCCATGGAAGCCACCAACTTACCTTTTTTCACCAGATGG
AACAGAGGAGTTTGAACTGGATGGGGAAATGGTTGCACTTCCGCCTGTATAG

Translation (623 aa):
MSTQEERQINTEYAVSLLEQLKLFYEQQLFTDIVLIVEGTEFPCHKMVLATCSSYFRAMFMSGLSESKQT
HVHLRNVDAAALQMIIAYAYTGNLAVNDSTVEQLYETACFLQVEDVLQRCREYLIKKINAENCVRLLSFA
DLFSCEELKQSAKRMVEHKFTAVYRQEAFMQLSHDLLIDILSSDNLNVEKEETVREAAMLWLEYNTESRS
QYLSSVLSQIRIDALSEVTQRAWFQGLPPNDKSVVVQGLYKSMPKFFKPRLGMTKEEMMIFIEASSENPC
SLYSSVCYSPQAEKVYKLCSPPADLHKVGTVVTPDNDIYIAGGQVPLKNTKTNHSKTSKLQTAFRTVNCF
YWFDAQQNTWFPKTPMLFVRVKPSLVCCEGYIYAIGGDSVGGELNRRTVERYDTEKDEWTMVSPLPCAWQ
WSAAVVVHDCIYVMTLNLMYCYFPRSDSWVEMAMRQTSRSFASAAAFGDKIFYIGGLHIATNSGIRLPSG
TVDGSSVTVEIYDVNKNEWKMAANIPAKRYSDPCVRAVVISNSLCVFMRETHLNERAKYVTYQYDLELDR
WSLRQHISERVLWDLGRDFRCTVGKLYPSCLEESPWKPPTYLFSPDGTEEFELDGEMVALPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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