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Report for CCDS51549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51549.1 Public Mus musculus 5 Septin11 23 108 98 CCDS HistoryNCBI Gene:52398Re-query CCDS DB by CCDS ID:51549.1Re-query CCDS DB by GeneID:52398See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074733.10 ENSMUSP00000074293.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074733.10Link to Ensembl Protein Viewer:ENSMUSP00000074293.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074733Re-query CCDS DB by Protein ID:ENSMUSP00000074293
Original member Current member NCBI NM_001009818.2 NP_001009818.1 Accepted alive Link to Nucleotide Sequence:NM_001009818.2Link to Protein Sequence:NP_001009818.1Re-query CCDS DB by Nucleotide ID:NM_001009818Re-query CCDS DB by Protein ID:NP_001009818Link to BLAST:NP_001009818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009818.1 429 Q8C1B7-2 429 100% 0 0

Chromosomal Locations for CCDS 51549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 93093571 93093597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93139449 93139563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93148387 93148582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93154870 93155056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93156851 93157012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93161150 93161246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93162124 93162292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93165249 93165381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93167500 93167687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93171339 93171354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCCGTGGCGGTGGGGAGACCGAGTAATGAAGAGCTGCGAAACTTATCACTTTCTGGCCATGTTGGAT
TTGACAGTCTGCCCGACCAGCTGGTCAACAAATCCACTTCTCAAGGATTCTGTTTCAACATCCTGTGCGT
GGGTGAGACAGGTATTGGCAAATCCACATTGATGGACACTTTATTCAACACCAAATTTGAAAGTGACCCA
GCTACTCACAACGAGCCAGGCGTCCGGTTAAAAGCCAGAAGCTATGAACTCCAGGAAAGCAACGTACGGC
TGAAGCTAACAATCGTTGACACAGTGGGATTTGGAGACCAGATTAATAAAGATGACAGCTATAAGCCTAT
AGTGGAATACATTGACGCCCAGTTTGAGGCCTACTTGCAAGAAGAATTGAAAATTAAACGTTCTCTCTTC
AACTATCATGACACAAGGATTCACGCCTGCCTTTACTTTATCGCCCCCACGGGACATTCACTGAAGTCCC
TGGACCTGGTCACCATGAAGAAGCTGGACAGCAAGGTGAACATCATCCCGATCATCGCGAAAGCCGACAC
CATCGCCAAAAACGAATTGCACAAATTCAAGAGTAAGATCATGAGTGAACTAGTTAGCAACGGAGTCCAG
ATATATCAGTTCCCCACAGATGAGGAAACAGTGGCAGAGATTAACGCAACGATGAGTGTCCATCTCCCAT
TCGCAGTGGTCGGCAGTACTGAAGAGGTCAAGATTGGCAACAAGATGGCGAAGGCCAGGCAGTACCCTTG
GGGTGTGGTGCAGGTTGAGAACGAAAACCACTGTGATTTTGTGAAGCTGCGGGAGATGCTGATCCGAGTG
AACATGGAGGACCTGCGAGAGCAGACGCACACTCGCCACTACGAGTTGTATCGGCGCTGCAAGCTTGAGG
AGATGGGCTTCAAGGACACGGACCCCGACAGCAAGCCCTTCAGTCTTCAGGAGACCTACGAAGCAAAGAG
GAACGAGTTCCTGGGGGAGCTACAGAAGAAAGAGGAGGAGATGAGACAGATGTTCGTCATGAGGGTGAAG
GAGAAAGAGGCGGAGCTCAAGGAGGCAGAAAAAGAGCTTCATGAGAAGTTCGACCTCCTGAAGCGGACTC
ACCAAGAGGAGAAGAAGAAGGTGGAAGATAAGAAGAAGGAGCTTGAGGAGGAGGTGAGCAACTTCCAGAA
AAAGAAGGCGGCGGCTCAGCTCTTGCAATCCCAGGCCCAGCAGTCTGGGGCCCAGCAAACCAAGAAGGAC
AAGGATAAGAAAAATGCAAGCTTCGCATAA

Translation (429 aa):
MAVAVGRPSNEELRNLSLSGHVGFDSLPDQLVNKSTSQGFCFNILCVGETGIGKSTLMDTLFNTKFESDP
ATHNEPGVRLKARSYELQESNVRLKLTIVDTVGFGDQINKDDSYKPIVEYIDAQFEAYLQEELKIKRSLF
NYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTIAKNELHKFKSKIMSELVSNGVQ
IYQFPTDEETVAEINATMSVHLPFAVVGSTEEVKIGNKMAKARQYPWGVVQVENENHCDFVKLREMLIRV
NMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVMRVK
EKEAELKEAEKELHEKFDLLKRTHQEEKKKVEDKKKELEEEVSNFQKKKAAAQLLQSQAQQSGAQQTKKD
KDKKNASFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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