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Report for CCDS51505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51505.1 Public Mus musculus 5 Pcdh7 23 108 98 CCDS HistoryNCBI Gene:54216Re-query CCDS DB by CCDS ID:51505.1Re-query CCDS DB by GeneID:54216See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191837.5 ENSMUSP00000142319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191837.5Link to Ensembl Protein Viewer:ENSMUSP00000142319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191837Re-query CCDS DB by Protein ID:ENSMUSP00000142319
Original member Current member NCBI NM_001122758.2 NP_001116230.1 Accepted alive Link to Nucleotide Sequence:NM_001122758.2Link to Protein Sequence:NP_001116230.1Re-query CCDS DB by Nucleotide ID:NM_001122758Re-query CCDS DB by Protein ID:NP_001116230Link to BLAST:NP_001116230.1

Chromosomal Locations for CCDS 51505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 57719105 57722278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 57913156 57913372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 58128975 58129351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3768 nt):
ATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGGTGCTTGGGCTGTTGTCTCCTTCTGCCGCTCT
GC
TTCAGCCTGGCCGCCGCCAAGCAGCTGCTCCGGTACCGGCTGGCCGAGGAGGGCCCCGCCGACGTGCG
G
ATCGGCAATGTGGCCTCGGACCTGGGCATCGTGACCGGCTCCGGCGAGGTGACTTTCAGCCTTGAGTCT
GGT
TCTGAGTATCTGAAGATTGACAACCTCACCGGCGAGCTGAGCACCAGTGAGCGGCGCATCGACCGAG
AA
AAGCTGCCCCAATGTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGAT
A
GGGCCCTCACAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACG
CCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGGCCTGTAGGCACGCTCTACCTGC
TG
CCCACGGCCACCGATCGTGACTTTGGTCGCAATGGCATCGAACGCTACGAGCTGCTCCAGGAGCCCGG
G
GGTGGCGGCGGCAGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCCTACCCAGGGGGCGGC
GGG
AACAGCGCGAGCGGCGGCGGCTCTGGAGGCTCCAAGCGGCGGCTGGACGCGCCTGAGGGTGGCGGCG
GG
ACGAGTCCTAGTGGCCGAAGCAGTGTGTTTGAGCTTCAGGTGGCAGACACTCCAGACGGCGAGAAACA
A
CCGCAGCTGATCGTGAAGGGGGCGCTGGACCGGGAGCAGAGAGATTCCTATGAGCTGACCCTCCGAGTG
CGC
GATGGGGGCGACCCACCTCGGTCTTCGCAGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACA
AC
AGCCCCCGCTTCGAGAAGAGCGTGTATGAGGCTGACCTGGCTGAGAACAGCGCTCCGGGCACCCCCAT
C
CTACAGTTGCGCGCCACCGATTTGGATGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCTGCC
ACC
GAGTCGGTAAGACGGCTACTGCGCCTGGATGAAACGTCGGGCTGGCTCAGTGTCTTACACCGGATCG
AC
CGCGAGGAAGTGAACCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACTGA
T
AAGGCCACCGTAGTCCTCAACATCAAAGACGAGAACGACAACGTTCCCTCCATCGAAATTCGCAAGATA
GGG
CGCATCCCACTTAAGGACGGGGTGGCCAACGTAGCCGAAGATGTCCTGGTGGACACCCCCATCGCCC
TG
GTTCAGGTGTCCGACCGTGACCAAGGCGAGAACGGGGTAGTCACCTGTACCGTAGTGGGAGACGTTCC
T
TTCCAGCTTAAGCCAGCCAGCGACACAGAAGGCGATCAAAACAAGAAAAAGTACTTCCTGCACACATCA
GCC
CCACTAGACTATGAGACCACCCGGGAGTTCAACGTGGTCATAGTAGCTGTGGACTCTGGCAGTCCCA
GC
CTCTCCAGCAACAATTCCTTGGTGGTCAAGGTGGGAGACACTAATGACAACCCTCCTGTCTTTGGCCA
G
TCTGTGGTTGAGGTTTACTTTCCAGAGAACAACATTCCCGGGGAGAGGGTAGCCACAGTGCTGGCGACA
GAT
GCTGACAGCGGGAAGAATGCAGAGATCGCCTATTCACTGGACTCCTCAGTGATGGGGACTTTTGCCA
TC
GATCCCGATTCTGGAGACATCCTGGTCAATACAGTACTGGACCGGGAGCAGACTGACAGGTATGAGTT
T
AAAGTTAATGCCAAAGACAAAGGCATCCCAGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCT
GAT
AAAAACGACAACGACCCTAAGTTTATGCAAGATGTCTTTACCTTTTATGTGAAGGAAAACTTACAAC
CC
AACAGCCCTGTGGGGATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGAGCCTGTA
C
ATAGAGGAGAACAGTAACATTTTTTCTATTGAAAATGACACAGGGACCATTTACTCCACAATGTCTTTT
GAC
AGGGAACATCAGACTACGTACACTTTCAGAGTGAAGGCTGTGGATGGGGGAGATCCTCCCAGGTCGG
CC
ACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAACGCTCCCACAGTTACCCTTCCCAGAAA
C
ATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAGGACAGTAGTAGCTACAGTGTTAGCGACAGAC
AGT
GATGATGGCATCAATGCGGACTTGAACTACAGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGA
TT
GATTCCACCAGTGGTGTGGTTTCCTTAGTGGGGAAACTCACCCAGAAGCATTATGGCTTGCACAGGCT
G
GTTGTGCAAGTGAATGACAGTGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTATTTGTCAAT
GAA
AGTGTTTCCAATGCAACTGTAATTGACTCTCAGATAGTCCGAAGTTTGCATACCCCACTCACCCAGG
AT
ATAGCTGGTGACCCAAGCTATGAAATTAGCAAACAGAGACTTAGTATTGTCATTGGGGTGGTTGCTGG
C
ATTATGACAGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAATAAAAAT
GGC
TACGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAATCTAAAAAGC
CT
AAAAAGGACAAGAAAAACAAAAAATCTAAGCAGCCACTCTACAGCAGTATCGTCACTGTCGAAGCTTC
T
AAACCAAATGGACAGAGGTATGATAGTGTCAATGAGAAGCTGTCAGACAGCCCAAGCATGGGCCGATAC
CGA
TCTGTTAATGGTGGGCCTGGCAGTCCCGACCTGGCAAGGCATTACAAATCCAGTTCCCCATTGCCTA
CT
GTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAAAAAACATCAAGCTGTACAAGATCTACCACCAGC
C
AACACATTTGTGGGAGCAGGAGACAACATTTCAATTGGATCAGATCACTGCTCCGAGTACAGCTGTCAA
ACA
AGTAACAAGTACAGCAAACAGCCATTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACC
CA
CATCAGGGGTCACTGCAGAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAG
T
TCATCAGGGCCAAGACTGGGTGCCCTTCCACTCCCAGAGGACAACTATGAGAGGACCACGCCGGATGGC
AGT
GTTGGTGAGGCAGAGCATATGGAAAATGATTCAAGGCCTCTTCCGGATGTAGCGCTGACCGGCAAGT
GC
ACCCGTGAATGTGATGAATATGGTCATTCAGACTCCTGCTGGATGCCAGTGCGCACTTCCCCAGAGAG
G
AAGAAGAGCCAGCCCAAACTCTCCACTTTCATGCCTGTTGATGAACGAGGAAGCCAGGAAAAGCTGGCC
AAT
GGCGAGGCTGCCATCATGGGTGACCGCAACAGAAACCTCCTGAACAAAAAATTGACCTCATCCTATG
AG
ACCTTCAGTGCAGCTAGTTTCAGCAAAAATGAGGAAGCCAACCCTGAGGATATTCCTTTAACAAAAAC
A
GGGGAATATAAGCCATCTCCTGTCAACACTCTCACTAGAAGAGAAGTTTATCTGTAG


Translation (1255 aa):
MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEVTFSLES
G
SEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFEGRVIVLDINDNT
P
TFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGSGEGRRLGPADSAPYPGGG
G
NSASGGGSGGSKRRLDAPEGGGGTSPSGRSSVFELQVADTPDGEKQPQLIVKGALDREQRDSYELTLRV
R
DGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAENSAPGTPILQLRATDLDVGVNGQIEYVFGAA
T
ESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKI
G
RIPLKDGVANVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTS
A
PLDYETTREFNVVIVAVDSGSPSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLAT
D
ADSGKNAEIAYSLDSSVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVA
D
KNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSF
D
REHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLATD
S
DDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVN
E
SVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVMMARYCRSKNKN
G
YEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPNGQRYDSVNEKLSDSPSMGRY
R
SVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQ
T
SNKYSKQ
PFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG
S
VGEAEHMEN
DSRPLPDVALTGKCTRECDEYGHSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLA
N
GEAAIMGDRNRNLLNKKLTSSYETFSAASFSKNEEANPEDIPLTKTGEYKPSPVNTLTRREVYL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser