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Report for CCDS51451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51451.1 Public Mus musculus 5 Selenoi 23 108 98 CCDS HistoryNCBI Gene:28042Re-query CCDS DB by CCDS ID:51451.1Re-query CCDS DB by GeneID:28042See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 51451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145167.7 ENSMUSP00000118368.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145167.7Link to Ensembl Protein Viewer:ENSMUSP00000118368.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145167Re-query CCDS DB by Protein ID:ENSMUSP00000118368
Original member Current member NCBI NM_027652.3 NP_081928.2 Accepted alive Link to Nucleotide Sequence:NM_027652.3Link to Protein Sequence:NP_081928.2Re-query CCDS DB by Nucleotide ID:NM_027652Re-query CCDS DB by Protein ID:NP_081928Link to BLAST:NP_081928.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081928.2 398 Q80TA1 398 100% 0 0

Chromosomal Locations for CCDS 51451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30232759 30232815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30247463 30247531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30248412 30248520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30252710 30252784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30256078 30256340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30257712 30257820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30263071 30263119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30264275 30264455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30265338 30265523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30266901 30266999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 388

Nucleotide Sequence (1197 nt):
ATGGCTGGCTACGAATACGTGAGCCCAGAGCAGCTGTCGGGCTTTGACAAGTACAAGTACAGCGCTTTGG
ATACCAACCCACTCTCTCTGTATATCATGCATCCATTTTGGAACACTATAGTGAAGGTGTTTCCTACTTG
GCTGGCTCCCAATCTTATAACCTTTTCTGGCTTTATGCTGCTTGTGTTCAATTTCCTACTCCTGACATAC
TTCGACCCTGACTTCTATGCTTCAGCCCCTGGTCATAAGCATGTGCCTGACTGGGTTTGGATTGTCGTGG
GCATCCTCAACTTTGCTGCCTACACTCTAGATGGAGTGGATGGAAAGCAAGCACGGAGAACCAATTCCAG
CACCCCGTTAGGGGAGCTGTTTGACCATGGCCTGGACAGTTGGTCGTGTGTTTACTTTGTTGTGACTGTG
TACTCCATCTTTGGACGAGGACCGACTGGCGTCAGTGTTTTTGTTCTTTATCTCCTGCTATGGGTAGTTT
TGTTTTCTTTTATCCTGTCTCACTGGGAGAAGTATAACACAGGCGTTCTTTTCCTGCCATGGGGATATGA
CATTAGCCAAGTGACTATTTCTTTTGTCTACATAGTGACTGCGGTTGTGGGAGTTGAGGCCTGGTATGAA
CCTTTCCTGTTTAATTTCTTATATAGAGACCTATTCACTGCAATGATTATTGGGTGTGCATTATGTGTGA
CTCTTCCAATGAGTTTATTAAACTTTTTTAGAAGCTATAAAAGCAACACGCTGAAGCACAAGTCCGTCTA
TGAAGCCATGGTCCCCTTCTTCTCTCCGTGTTTGCTCTTCACTTTGTGTACAGTGTGGATCCTCTGGTCA
CCTTCAGATATCTTAGAAATACACCCTAGAATATTCTACTTCATGGTTGGAACAGCTTTTGCCAATATCA
CATGTCAGCTAATTGTTTGCCAAATGAGCAGCACGCGGTGCCCGACTTTGAACTGGTTACTGCTTCCTCT
CCTCTTGGTTGTGGCAGCGGTGATCGTAGGTGCAGCCACCTCCCGCCTTGAGAGCGCCCTCCTTTACACA
CTCACGGCTGCCTTCACTCTGGCTCACATCCATTATGGCGTACAAGTGGTGAAGCAGCTGAGCCGACATT
TTCAGATTTATCCTTTTTCATTGAGGAAACCAAACTCAGATTGACTAGGAATGGAAGAACAGAATATCGG
CCTGTAA

Translation (398 aa):
MAGYEYVSPEQLSGFDKYKYSALDTNPLSLYIMHPFWNTIVKVFPTWLAPNLITFSGFMLLVFNFLLLTY
FDPDFYASAPGHKHVPDWVWIVVGILNFAAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTV
YSIFGRGPTGVSVFVLYLLLWVVLFSFILSHWEKYNTGVLFLPWGYDISQVTISFVYIVTAVVGVEAWYE
PFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWS
PSDILEIHPRIFYFMVGTAFANITCQLIVCQMSSTRCPTLNWLLLPLLLVVAAVIVGAATSRLESALLYT
LTAAFTLAHIHYGVQVVKQLSRHFQIYPFSLRKPNSDULGMEEQNIGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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