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Report for CCDS51399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51399.1 Public Mus musculus 4 Arhgef16 23 108 98 CCDS HistoryNCBI Gene:230972Re-query CCDS DB by CCDS ID:51399.1Re-query CCDS DB by GeneID:230972See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030898.11 ENSMUSP00000030898.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030898.11Link to Ensembl Protein Viewer:ENSMUSP00000030898.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030898Re-query CCDS DB by Protein ID:ENSMUSP00000030898
Original member Current member EBI ENSMUST00000169623.7 ENSMUSP00000126296.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169623.7Link to Ensembl Protein Viewer:ENSMUSP00000126296.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169623Re-query CCDS DB by Protein ID:ENSMUSP00000126296
Original member Current member NCBI NM_001112744.1 NP_001106215.1 Accepted alive Link to Nucleotide Sequence:NM_001112744.1Link to Protein Sequence:NP_001106215.1Re-query CCDS DB by Nucleotide ID:NM_001112744Re-query CCDS DB by Protein ID:NP_001106215Link to BLAST:NP_001106215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106215.1 713 Q3U5C8 713 100% 0 0

Chromosomal Locations for CCDS 51399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154278956 154279095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154279698 154279799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154280236 154280309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154280831 154281019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154281318 154281469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154281824 154281916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154282006 154282080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154282516 154282645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154282760 154282912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154284985 154285145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154285614 154285670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154286919 154287088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154287968 154288013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154290936 154291535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGTCCCAGAGACATTCTGACAGCTCTCTGGATGAGAAACTACTGGAGTATCGCTTCCACGCAGAGCTGC
GCCTCGATGCCAACGGGAACCCTATCCCTGGACTCCCCATGGTCCGGAGCTCCTTGAAAGCCAGAGCCAA
TGCTGCCTTTGAGCCAGATGCCTCAGAACCCCTGCCGCCACCTCCGTCACCAGAAGACGAAGAGCCTCCT
CGGCCCATCGTCCTTAGCACGCAAAGCCCCGCGGCCCTCAAGATGGGCACGCAGCAGCTCATCCCCAAAA
GTCTGGCTGTGGCCAGCAAGGCCAAGACCAAGTCCCCAGCCCGCCACCAGAGCTTTGGGGCGGCTGTGCT
CAGCAAGGAGGCTGCCAGGCGGAATCCTCAGCTCTTCTCAGCCCCCAGCTTCTCGTTGGATGACATGGAT
ATGGACATGGTTACTACCGGGAACCTGAGGCGCAACCTGAGGAACCAGTCCTACAGGGCAGCCATGAAGG
GGCCGGGGCCACCCAGTAGCAAGGGGGACTCAGTCCAGCTTGGCCCCAAGCTCCAGGCTCTCGCTGAGGA
GGCTGCTCAGCCTCCCTCCCGGTATCCAGCCAAAAATAAGAAAACTCTCGGTCGGAAACGTGCGCACAAG
GGCTCTTTCAAAGATGACCCCCAGCTGTATCAGGAGATCCGAGAGCGGGGTTTGAACACCAGTCACGAGT
CCGATGATGACATTCTTGATGAGCCCTCCGGCCCAGTGGGAACTCAGAGAGCGGACACCACCATCGTGGT
CAAGAGCTATCGGCCTGCTCAGCTCACCTGGAGCCAGCTCCCAGAGGTGCTGGAGTCAGGTGTCCTGGAC
ACGCTGTCAACGGAAGAACGGAAGAGGCAGGAGGCCATCTTCGAGATCCTCACTTCTGAGTTCTCGTATC
TGCACAGCCTGAGCATCCTGGTGACTGAGTTCCTGCAGTCCCGGGAGCTGAGGGCCACTATGACCCAGAC
GGAACACCACCACCTCTTCTCCAACATCTTGGATGTGATGTCTGCCAGTCAGAAGTTCTTTGAAGCCCTG
GAGCAGCGGCACAAAGCTCAGGTGTGCGTGGAGGACATCAGCGACATCTTGGAGGACCATGCTCAGCATC
ATTTCCACCCTTACATCGCCTACTGCTCCAACGAGGTCTATCAACAGCGCACCCTGCAGAAGCTGTCGAA
CAGCAACGCAGCCTTCCGGGACGTTCTGAAGGAGATCGAGAAGCGGCCTGCGTGTGGGGGCCTGCCCATG
ATCTCTTTCCTGATTCTCCCCATGCAGAGAGTGACCCGGCTGCCGCTGCTGACAGATACACTCTGCCTGA
AGACGCAAGGCCATCCCGAACGGTATAAAGCTGCCAGCCAAGCCCTGAAGGCCATCAGCAAGCTGGTGAA
GCAGTGTAACGAGGGAGCTCACAAGATGGAGCGCACAGAGCAGATATACACACTGAACATGCAGCTGGAC
TTCGGCAAGGTCAAGTCCCTCCCGCTCATCTCCGCCTCTCGCTGGCTGCTGAAGCGTGGGGAGCTCTTCC
TCTTGGAGGAATCCAGTATCTTTAGGAAAATCGCCAGCCGACCCACGTGTTATCTGTTCCTGTTCAATGA
TGTCCTGGTTGTCACCAAGAAGAAAAGTGAGGAAAGCTACCTGGTCCAAGACTACGCGCAGCTAGACCAC
GTACAGGTCAGGAAACTGGAACCCTCGGAGCCCTTGCTGCCAGGAGGCAGCAGCCGCAGCTCCTCCGTGC
CCTACCCATTCCAGGTGAACCTGCTACATAACAGCGAGGGCCGCCAGGAGCAGATACTGCTGTCGTCCGA
CTCTGCGAGTGACCGGGCCCGGTGGATCACAGCACTCACCTACAAGGAGAGACAGTGGCAGGGCATCACC
AACAAAGGAGAACTCCCCCAGGTAGAGGTCACCAAGGCGTACTTTGCCAAGCAGGCTGATGAGATCACAC
TGCAACAGGCTGACATCGTCCTGGTCCTGCAGGAAGAGGACGGTTGGCTACACGGGGAGCGGCTTCGGGA
CGGAGAGACCGGCTGGTTTCCCGAGAGCTTTGCTCACTCCATCACCAGCCGTGTGGCCGTGGAAGGCAAC
GTGCGCAGGATGGAGCGGCTGCGGGTGGAGACGGATGTGTAG

Translation (713 aa):
MSQRHSDSSLDEKLLEYRFHAELRLDANGNPIPGLPMVRSSLKARANAAFEPDASEPLPPPPSPEDEEPP
RPIVLSTQSPAALKMGTQQLIPKSLAVASKAKTKSPARHQSFGAAVLSKEAARRNPQLFSAPSFSLDDMD
MDMVTTGNLRRNLRNQSYRAAMKGPGPPSSKGDSVQLGPKLQALAEEAAQPPSRYPAKNKKTLGRKRAHK
GSFKDDPQLYQEIRERGLNTSHESDDDILDEPSGPVGTQRADTTIVVKSYRPAQLTWSQLPEVLESGVLD
TLSTEERKRQEAIFEILTSEFSYLHSLSILVTEFLQSRELRATMTQTEHHHLFSNILDVMSASQKFFEAL
EQRHKAQVCVEDISDILEDHAQHHFHPYIAYCSNEVYQQRTLQKLSNSNAAFRDVLKEIEKRPACGGLPM
ISFLILPMQRVTRLPLLTDTLCLKTQGHPERYKAASQALKAISKLVKQCNEGAHKMERTEQIYTLNMQLD
FGKVKSLPLISASRWLLKRGELFLLEESSIFRKIASRPTCYLFLFNDVLVVTKKKSEESYLVQDYAQLDH
VQVRKLEPSEPLLPGGSSRSSSVPYPFQVNLLHNSEGRQEQILLSSDSASDRARWITALTYKERQWQGIT
NKGELPQVEVTKAYFAKQADEITLQQADIVLVLQEEDGWLHGERLRDGETGWFPESFAHSITSRVAVEGN
VRRMERLRVETDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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