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Report for CCDS51318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51318.1 Public Mus musculus 4 Phactr4 23 108 98 CCDS HistoryNCBI Gene:100169Re-query CCDS DB by CCDS ID:51318.1Re-query CCDS DB by GeneID:100169See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084170.11 ENSMUSP00000081185.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084170.11Link to Ensembl Protein Viewer:ENSMUSP00000081185.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084170Re-query CCDS DB by Protein ID:ENSMUSP00000081185
Original member NCBI NM_001161797.1 NP_001155269.1 Updated not alive Link to Nucleotide Sequence:NM_001161797.1Link to Protein Sequence:NP_001155269.1Re-query CCDS DB by Nucleotide ID:NM_001161797Re-query CCDS DB by Protein ID:NP_001155269
Current member NCBI NM_001161797.2 NP_001155269.1 Accepted alive Link to Nucleotide Sequence:NM_001161797.2Link to Protein Sequence:NP_001155269.1Re-query CCDS DB by Nucleotide ID:NM_001161797Re-query CCDS DB by Protein ID:NP_001155269Link to BLAST:NP_001155269.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155269.1 667 Q501J7-2 667 100% 0 0

Chromosomal Locations for CCDS 51318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132358269 132358284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132360475 132360551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132361578 132361715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132363731 132363792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132365575 132365630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132367902 132368055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132369734 132369915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132370526 132371120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132377180 132377554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132378405 132378563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132386892 132387065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132413070 132413085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGGAAGACCCATCGGAAGAAGCAGAGCAGCCCTCTGGAGACCCAGGCATGGGCATGGACAGTGTGGAAG
CAGGGGACACAACACCTCCCACCAAAAGGAAAAGCAAGTTCTCAGCGTTAGGCAAGATCTTCAAGCCGTG
GAAATGGAGGAAAAAAAAAAGCAGTGATAAGTTCAAAGAGACATCAGAAGATGGTGAGGATTCAGGAAAG
CTGAGCCATGCTGCATTAAAGAACGGACACACCACCCCCATAGGCAGTGCCAGGTCCTCTAGCCCAGTCC
TGGTAGAAGAAGAGCCAGAGAGAAGTCTCAGGAACCTCACTCCAGAAGAGGAGTCAAAGAAGAGACTTGG
CTCAACTGGAAGCCAGCCTAACTCTGAAGCCGAGCCTGGTCCTGAGCATGCACCTAAGCAGCCTCTGCTG
CCCCCCAAGAGACCCTTGTCCTCTTCTTGTGAAGCAAAGGAGGTTCCGGCTGGCAGTACAGCAAGGTCCG
TCTCCTCCACCTCTGGCTCTACCACCGTGACATCTGCTGCCACCACTGCTGCCACAGACATGACAAAGAC
TGTTAAGTCCTTTGTGGGCCCCACCCCCGCTCCTGCCCCCGCCCCCAGGACTCTGCCTGCTGCTCCTGCC
AGTGCTAACACTGCTGCCACCACTACAGCCCCTGCCAAGCAACCCCCCATCCCACCCCCTAAACCAGCTC
AGAGAAACAGCAACCCCATCATTGCTGAACTATCCCAAGCAATGAACAGTGGCACAGTGCTGTCGAAACC
ATCCCCACCCTTGCCACCCAAGAGAGGCATTCCATCAACTTCGATACCCAGCTTGGAGCCTGCTGCTTCG
TTCACAACTAAGACAGCAAATGATCAAAGAGAAAAAACTGTCTCTTTGTGTTTGGAACCACCACTGATAA
TCCCGCCTTCGTCCCCATCACCCCCACTGCCTACCCACATACCTCCCGAGCCTCCACGGTCCCCTCTAGT
GCCTGCTAAGACTTTTCAAATTGTGCCAGAGGTTGAGTTTTCCTCTTCTTCAGATCTATTCCAGGACATT
TCCCAGCAGGAGGATCAGAAAACAGAAGTCCCCAAGAAGATACAGGATCAGAGCTTTGGGGAGTCCCATA
TACCCTCCAGGCTGCCCCCACTCCCACTGCATATCCGAATTCAGCAGGCCCTTACCAGCCCCCTTCCTGT
GACCCCTCCCTTGGAAGGCACTCACAGAGCCCATTCACTGCTTTTTGAGAACAGTGACAGCTTCTCCGAG
GACACTGGTACCCTGGGTCGTACCAGGTCACTTCCCATCACGATTGAGATGTTGAAAGTTCCAGATGATG
AAGAGGAAGAGCAGACCTGCCCGTTTGTTGAAGACGTGACGTCTACCTCAGCCACTCCTAGCCTACCACT
GTGTCTGCGAGAGGAAGAGAAGGAGAGTGACTCAGATTCAGAGGGTCCCATTAAGTACCGAGATGAAGAA
GAAGATGATGATGATGATGAAAGCCATCAGAGTGCCCTGGCCAACAGAGTGAAGAGGAAGGACACGCTGG
CAATGAAGCTGAGCAGCAGACCCAGTGAACCAGAGACCAACCTGAATTCTTGGCCTCGTAAAAGCAAGGA
GGAGTGGAATGAAATACGGCACCAGATCGGGAACACGCTGATCCGGCGGCTGAGTCAGAGACCAACAGCA
GAAGAATTGGAGCAGCGGAACATACTACAGCCTAAAAATGAAGCTGATCGGCAAGCAGAGAAACGGGAAA
TCAAGCGTCGCCTCACTAGAAAGCTCAGTCAAAGGCCAACTGTGGCTGAACTGCTTGCCAGGAAGATTCT
GCGGTTTAATGAGTATGTGGAAGTAACTGATGCTCATGACTATGACCGGCGAGCAGACAAACCATGGACC
AAACTGACTCCTGCTGACAAGGCTGCCATAAGGAAAGAATTAAATGAATTTAAGAGCTCGGAGATGGAGG
TTCATGTAGACAGCAAACACTTTACACGCTACCATCGCCCATGA

Translation (667 aa):
MEDPSEEAEQPSGDPGMGMDSVEAGDTTPPTKRKSKFSALGKIFKPWKWRKKKSSDKFKETSEDGEDSGK
LSHAALKNGHTTPIGSARSSSPVLVEEEPERSLRNLTPEEESKKRLGSTGSQPNSEAEPGPEHAPKQPLL
PPKRPLSSSCEAKEVPAGSTARSVSSTSGSTTVTSAATTAATDMTKTVKSFVGPTPAPAPAPRTLPAAPA
SANTAATTTAPAKQPPIPPPKPAQRNSNPIIAELSQAMNSGTVLSKPSPPLPPKRGIPSTSIPSLEPAAS
FTTKTANDQREKTVSLCLEPPLIIPPSSPSPPLPTHIPPEPPRSPLVPAKTFQIVPEVEFSSSSDLFQDI
SQQEDQKTEVPKKIQDQSFGESHIPSRLPPLPLHIRIQQALTSPLPVTPPLEGTHRAHSLLFENSDSFSE
DTGTLGRTRSLPITIEMLKVPDDEEEEQTCPFVEDVTSTSATPSLPLCLREEEKESDSDSEGPIKYRDEE
EDDDDDESHQSALANRVKRKDTLAMKLSSRPSEPETNLNSWPRKSKEEWNEIRHQIGNTLIRRLSQRPTA
EELEQRNILQPKNEADRQAEKREIKRRLTRKLSQRPTVAELLARKILRFNEYVEVTDAHDYDRRADKPWT
KLTPADKAAIRKELNEFKSSEMEVHVDSKHFTRYHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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