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Report for CCDS51310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51310.1 Public Mus musculus 4 Serinc2 23 108 98 CCDS HistoryNCBI Gene:230779Re-query CCDS DB by CCDS ID:51310.1Re-query CCDS DB by GeneID:230779See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105996.7 ENSMUSP00000101618.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105996.7Link to Ensembl Protein Viewer:ENSMUSP00000101618.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105996Re-query CCDS DB by Protein ID:ENSMUSP00000101618
Original member Current member NCBI NM_172702.3 NP_766290.2 Accepted alive Link to Nucleotide Sequence:NM_172702.3Link to Protein Sequence:NP_766290.2Re-query CCDS DB by Nucleotide ID:NM_172702Re-query CCDS DB by Protein ID:NP_766290Link to BLAST:NP_766290.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766290.2 450 Q8K0E7 450 100% 0 0

Chromosomal Locations for CCDS 51310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130253930 130254065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130255356 130255565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130258228 130258363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130258701 130258791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130260643 130260812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130263028 130263165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130263582 130263661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130264261 130264451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130265069 130265230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130275458 130275496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGGGGCCTGTCTCGGGGCCTGCTCCCTGCTCAGCTGCGCATCCTGCCTCTGCGGCTCTGCACCCTGCA
TCCTATGTGGCTGTTGCCCCTCAACCCGCAACTCCACGGTGAGCCGCCTCCTCTTCACCAGCTTCCTCTT
CTTGGGGGTGCTGGTGTCCATCATCATGCTGAGCCCGGGAGTGGAGAGTCAGCTTTACAAGCTGCCCTGG
GTGTGTGAGGACAGGACCCAGCAACCCCTGGTCCTGCAGGGGCCCCTGGACTGCGGCTCCCTGCTGGGTT
TCCGCGCTGTCTACCGTATGTGCTTTGCCACAGCAGCCTTTTTCTTCTTCTTCATGCTGTTAATGATCTG
TGTCCGCAGTAGCCGGGATCCGCGAGCAGCCATCCAGAACGGGTTTTGGTTTTTTAAATTCCTGATCCTT
GTGGGTATCACTGTGGGCGCCTTCTACATCCCTGATGGCTCCTTTCCCAAGATCTGGTTCTACTTTGGCG
TCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCTGATCCTGTTTGTTGACTTTGCCCACTCCTGGAATCA
GCGGTGGCTGTGTAAGGCCGAGGAGTGTGACTCTCCAGCCTGGTACGCAGGCCTTTTCTTCTTCACCTTC
CTCTTCTACCTGTTGTCCATCGCTGCTGTGGCACTGATGTTCGTCTACTACACGGAGTCTGGTGCCTGCC
ATGAGGGCAAGGTCTTCATCAGCCTCAATCTCACCTTCTGTGTCTGCGTCTCCATCATTGCTGTCCTGCC
CAAGGTCCAGGATGCTCAGCCCAACTCGGGTCTGCTGCAAGCCTCCGTCATAACCTTGTATACAATGTTT
GTCACCTGGTCTGCCCTATCCAACGTCCCTGACCAAAAATGCAACCCTCACCTGCCCACTAAAAATGGAA
CAGGCCAGGTGGACCTGGAGGACTACAGCACGGTGTGGTGGGATGCCCCGAGCATTGTGGGCCTCGTCAT
CTTCATCCTGTGCACCTTCTTCATTAGCCTGCGATCCTCTGACCACCGTCAGGTGAACAGCCTGATGCAG
ACAGAGGAGTGTCCGGCAGAGATGGTGCAGCAGCAGCAGGTGGCCGTCAGTGATGGCAGAGCCTATGACA
ATGAGCAGGATGGTGTCACCTACAGCTACTCCTTCTTCCACTTCTGCCTGGTGCTGGCCTCCCTGCATGT
CATGATGACGCTTACCAACTGGTACAGCCCTGGAGAGACCCGGAAGATGATCAGCACTTGGACCTCAGTG
TGGGTGAAGATCTGTGCCAGCTGGGCGGGGCTGTTCCTCTACCTGTGGACCCTAGTGGCACCCCTGCTCC
TGCCCAACAGAGACTTCAGCTGA

Translation (450 aa):
MGACLGACSLLSCASCLCGSAPCILCGCCPSTRNSTVSRLLFTSFLFLGVLVSIIMLSPGVESQLYKLPW
VCEDRTQQPLVLQGPLDCGSLLGFRAVYRMCFATAAFFFFFMLLMICVRSSRDPRAAIQNGFWFFKFLIL
VGITVGAFYIPDGSFPKIWFYFGVVGSFLFILIQLILFVDFAHSWNQRWLCKAEECDSPAWYAGLFFFTF
LFYLLSIAAVALMFVYYTESGACHEGKVFISLNLTFCVCVSIIAVLPKVQDAQPNSGLLQASVITLYTMF
VTWSALSNVPDQKCNPHLPTKNGTGQVDLEDYSTVWWDAPSIVGLVIFILCTFFISLRSSDHRQVNSLMQ
TEECPAEMVQQQQVAVSDGRAYDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYSPGETRKMISTWTSV
WVKICASWAGLFLYLWTLVAPLLLPNRDFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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