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Report for CCDS51170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51170.1 Public Mus musculus 4 Gne 23 108 98 CCDS HistoryNCBI Gene:50798Re-query CCDS DB by CCDS ID:51170.1Re-query CCDS DB by GeneID:50798See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102936.8 ENSMUSP00000100000.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102936.8Link to Ensembl Protein Viewer:ENSMUSP00000100000.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102936Re-query CCDS DB by Protein ID:ENSMUSP00000100000
Original member Current member NCBI NM_001190414.2 NP_001177343.1 Accepted alive Link to Nucleotide Sequence:NM_001190414.2Link to Protein Sequence:NP_001177343.1Re-query CCDS DB by Nucleotide ID:NM_001190414Re-query CCDS DB by Protein ID:NP_001177343Link to BLAST:NP_001177343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177343.1 722 Q91WG8 722 100% 0 0

Chromosomal Locations for CCDS 51170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44037118 44037353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44038947 44039063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44040254 44040436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44041663 44041884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44042163 44042292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44044759 44044969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44045903 44045990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44052771 44052983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44055205 44055357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44059776 44060227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44066755 44066918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGGAGAAGAACGGGAACAACCGAAAGCTCCGGGTTTGCGTTGCCACCTGCAACCGAGCTGACTACTCCA
AACTGGCCCCGATCATGTTCGGCATCAAGACAGAGCCCGCGTTCTTTGAGTTGGACGTGGTGGTGCTCGG
CTCCCACCTGATTGACGACTATGGAAACACATACCGCATGATTGAGCAAGATGACTTTGACATTAACACC
AGGCTCCACACGATTGTTAGAGGGGAAGATGAAGCGGCCATGGTAGAGTCGGTAGGCCTAGCGCTCGTGA
AGCTACCGGACGTCCTCAATCGCCTGAAGCCCGACATCATGATTGTTCACGGAGACCGATTTGACGCCCT
TGCTCTGGCTACGTCTGCTGCCTTGATGAACATCCGCATCCTTCACATTGAAGGAGGCGAGGTCAGCGGG
ACCATTGATGACTCTATCAGACACGCCATAACAAAACTGGCTCACTACCATGTGTGCTGCACTAGAAGTG
CAGAGCAGCACCTGATCTCTATGTGCGAGGACCACGACCGCATCCTGTTGGCAGGCTGCCCTTCCTATGA
CAAACTGCTCTCCGCCAAGAACAAAGACTATATGAGCATCATTCGGATGTGGCTAGGCGATGATGTAAAA
TGTAAGGATTACATCGTTGCCCTGCAGCATCCCGTGACCACTGACATTAAGCATTCCATAAAGATGTTTG
AGCTAACACTGGATGCCCTGATCTCGTTTAACAAGAGGACCCTAGTTCTGTTTCCAAATATCGATGCAGG
CAGCAAGGAGATGGTTCGAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCAATTTCCGTGCAGTCAAG
CACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCAGCTGCG
GCGTGCGAGAGGTTGGCGCTTTCGGAACACCCGTGATCAACCTGGGCACAAGGCAGATAGGAAGAGAAAC
CGGGGAGAATGTTCTTCATGTCAGGGATGCTGACACCCAAGATAAAATATTGCAAGCACTACACCTCCAG
TTCGGCAAACAGTACCCTTGCTCAAAGATATATGGGGATGGGAATGCTGTTCCAAGGATTTTAAAGTTTC
TCAAATCCATTGACCTTCAAGAGCCACTACAGAAGAAATTCTGCTTCCCCCCTGTAAAGGAGAACATCTC
TCAAGACATTGACCACATCCTGGAAACTCTGAGTGCCTTGGCTGTTGATCTTGGCGGGACAAACCTGAGG
GTGGCAATAGTTAGCATGAAGGGTGAAATCGTTAAGAAGTACACTCAGTTCAACCCTAAAACCTATGAAG
AAAGGATTAGTTTAATCCTGCAGATGTGTGTGGAAGCTGCCGCGGAAGCTGTGAAACTCAATTGCAGAAT
TCTGGGAGTAGGCATCTCCACAGGTGGCCGCGTGAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAG
CTGATCCAGGAATGGAACTCCGTGGACCTCAGGACACCCCTCTCCGACACCCTGCATCTCCCCGTGTGGG
TGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACAGGAGAACTT
CGTGACGCTCATCACGGGGACAGGGATCGGTGGGGGGATCATCCACCAGCACGAACTGATCCACGGCAGC
TCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCCTGACTGCTCCTGTGGAAGCC
ATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATGAGGA
CCTGCTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCT
GCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAACAGCTGGAACTGCTTTGGGACTTGGGGTTG
TGAACATCCTCCACACTATGAATCCTTCCCTGGTGATCCTGTCTGGAGTCCTGGCCAGTCACTACATCCA
CATCGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTGCAGGATGTGGACGTGGTGGTCTCAGAC
TTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAG

Translation (722 aa):
MEKNGNNRKLRVCVATCNRADYSKLAPIMFGIKTEPAFFELDVVVLGSHLIDDYGNTYRMIEQDDFDINT
RLHTIVRGEDEAAMVESVGLALVKLPDVLNRLKPDIMIVHGDRFDALALATSAALMNIRILHIEGGEVSG
TIDDSIRHAITKLAHYHVCCTRSAEQHLISMCEDHDRILLAGCPSYDKLLSAKNKDYMSIIRMWLGDDVK
CKDYIVALQHPVTTDIKHSIKMFELTLDALISFNKRTLVLFPNIDAGSKEMVRVMRKKGIEHHPNFRAVK
HVPFDQFIQLVAHAGCMIGNSSCGVREVGAFGTPVINLGTRQIGRETGENVLHVRDADTQDKILQALHLQ
FGKQYPCSKIYGDGNAVPRILKFLKSIDLQEPLQKKFCFPPVKENISQDIDHILETLSALAVDLGGTNLR
VAIVSMKGEIVKKYTQFNPKTYEERISLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPQEGVVLHSTK
LIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAAMAERKFGQGKGQENFVTLITGTGIGGGIIHQHELIHGS
SFCAAELGHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHLIQA
AKLGNVKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQALSSVQDVDVVVSD
LVDPALLGAASMVLDYTTRRIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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