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Report for CCDS51165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51165.1 Public Mus musculus 4 Cd72 23 108 98 CCDS HistoryNCBI Gene:12517Re-query CCDS DB by CCDS ID:51165.1Re-query CCDS DB by GeneID:12517See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098105.3 ENSMUSP00000095709.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098105.3Link to Ensembl Protein Viewer:ENSMUSP00000095709.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098105Re-query CCDS DB by Protein ID:ENSMUSP00000095709
Original member NCBI NM_001110321.1 NP_001103791.1 Updated not alive Link to Nucleotide Sequence:NM_001110321.1Link to Protein Sequence:NP_001103791.1Re-query CCDS DB by Nucleotide ID:NM_001110321Re-query CCDS DB by Protein ID:NP_001103791
Current member NCBI NM_001110321.2 NP_001103791.1 Accepted alive Link to Nucleotide Sequence:NM_001110321.2Link to Protein Sequence:NP_001103791.1Re-query CCDS DB by Nucleotide ID:NM_001110321Re-query CCDS DB by Protein ID:NP_001103791Link to BLAST:NP_001103791.1

Chromosomal Locations for CCDS 51165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43448265 43448415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43449452 43449549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43450070 43450221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43452307 43452639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43453083 43453172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43454242 43454349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43454446 43454527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGCTGACGCTATCACGTATGCAGACCTGCGCTTTGTGAAAGTGCCCCTGAAGAACAGCGCATCTAACC
AT
CTAGGACAGGACTGTGAGGCCTATGAAGATGGGGAACTCACCTACGAGAATGTGCAAGTGTCTCCAGT
C
CCAGGAGGGCCACCAGGCTTGGCTTCCCCTGCACTAGCGGACAAAGCAGGTCCTACAGTCTGCTTGCAA
TAC
TTCTTGCTTGGCCTTCTCGTGTCCTGTCTGATGTTAGGGGTGGCTGTCATCTGCCTGGGAGTTCGCT
AT
CTGCAGGTGTCTCGGCAGTTCCAGGAGGGGACCAGGATTTGGGAAGCCACCAATAGCAGCCTGCAGCA
G
CAGCTCAGGGAGAAGATAAGTCAGCTGGGGCAGAAGGAGGTGGAGCTTCAGAAGGCTCGGAAAGAGCTG
ATC
TCGAGCCAGGACACATTACAGGAGAAGCAGAGGACTCACGAGGACGCTGAGCAGCAACTACAAGCCT
GC
CAGGCTGAGAGAGCGAAGACCAAGGAGAACCTGAAAACTGAGGAGGAGCGGAGGAGGGACCTGGACCA
G
AGGTTGACAAGCACGCGGGAGACACTGAGGCGCTTCTTCTCTGATTCATCAGACACCTGCTGTCCATGC
GGA
TGGATTCCATATCAGGAAAGGTGCTTTTACATCTCACATACCCTCGGAAGTCTGGAGGAGAGCCAAA
AA
TACTGCACATCTCTGTCCTCCAAACTGGCAGCATTCGATGAACCTTCTAAGTATTACTATGAATACCT
C
TCTGACGCCCCCCAGGTTTCTCTGCCCAGCGGCTTAGAGGAGTTGCTAGATCGTTCGAAGTCATATTGG
ATA
CAGATGAGCAAGAAGTGGAGGCAGGACTCTGACTCTCAAAGCCGACATTGTGTCAGGATAAAAACAT
AT
TACCAGAAGTGGGAAAGAACAATTTCCAAGTGTGCAGAGCTTCACCCCTGCATTTGTGAGTCGGAGGC
T
TTCAGGTTTCCTGATGGGATCAATCTGAACTGA


Translation (337 aa):
MADAITYADLRFVKVPLKNSASNHLGQDCEAYEDGELTYENVQVSPVPGGPPGLASPALADKAGPTVCLQ
Y
FLLGLLVSCLMLGVAVICLGVR
YLQVSRQFQEGTRIWEATNSSLQQQLREKISQLGQKEVELQKARKEL
I
SSQDTLQEKQRTHEDAEQQLQACQAERAKTKENLKTEEERRRDLDQRLTSTRETLRRFFSDSS
DTCCPC
G
WIPYQERCFYISHTLGSLEESQKYCTSLSSKLAAFDEPSKYYYE
YLSDAPQVSLPSGLEELLDRSKSYW
I
QMSKKW
RQDSDSQSRHCVRIKTYYQKWERTISKCAELHPCICESEAFRFPDGINLN



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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