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Report for CCDS51161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51161.1 Public Mus musculus 4 Unc13b 23 108 98 CCDS HistoryNCBI Gene:22249Re-query CCDS DB by CCDS ID:51161.1Re-query CCDS DB by GeneID:22249See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107952.8 ENSMUSP00000103586.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107952.8Link to Ensembl Protein Viewer:ENSMUSP00000103586.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107952Re-query CCDS DB by Protein ID:ENSMUSP00000103586
Original member Current member NCBI NM_021468.3 NP_067443.2 Accepted alive Link to Nucleotide Sequence:NM_021468.3Link to Protein Sequence:NP_067443.2Re-query CCDS DB by Nucleotide ID:NM_021468Re-query CCDS DB by Protein ID:NP_067443Link to BLAST:NP_067443.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067443.2 1602 Q9Z1N9-1 1602 100% 0 0

Chromosomal Locations for CCDS 51161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43059264 43059285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43087903 43087932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43091228 43091327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43095746 43095863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43096899 43097022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43101801 43101874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43115103 43115160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43161443 43161478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43165744 43165978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43180328 43180642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43182769 43182859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43230118 43230164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43232530 43232608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43234666 43234740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43235182 43235401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43236920 43237147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43237697 43237838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43239297 43239466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43239846 43239961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43240225 43240388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43241007 43241157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43243235 43243303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43244702 43244791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43245468 43245596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43249457 43249581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43250217 43250302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43255475 43255601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43255821 43255917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43256129 43256272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43256776 43256853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43257276 43257353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43257847 43257935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258150 43258302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258421 43258544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258651 43258707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258869 43258949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43259462 43259609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43261682 43261774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43262977 43263136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43263300 43263585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4809 nt):
ATGTCGCTGCTCTGTGTGCGTGTTAAAAGAGCCAAATTCCAGGGTTCACCAGATAAATTTAACACATATG
TGACCCTGAAAGTCCAGAACGTGAAGAGCACAACTGTAGCAGTTCGTGGTGATCAGCCTTCCTGGGAGCA
GGATTTCATGTTTGAGATCAGTCGTCTGGACCTGGGCCTAAGTGTGGAGGTGTGGAACAAGGGACTGATA
TGGGACACAATGGTGGGCACCGTGTGGATTGCACTGAAGACAATCCGTCAGTCGGATGAGGAAGGGCCCG
GGGAGTGGTCTACACTGGAGGCAGAGACGTTAATGAAAGATGATGAGATCTGTGGAACTAAAAATCCAAC
TCCTCATAAAATCTTGCTTGATACAAGATTTGAGCTGCCTTTTGACATCCCAGAGGAGGAAGCCAGATAT
TGGACCTACAAATTGGAGCAAATCAATGCCTTGGCAGATGATAATGAGTATTCTAGTCAAGAAGAAAGCC
AGAGGAAGCCATTACCCACTGCTGCCGCCCAGTGTTGTCACTGGACCTATTTGGGCTGGGGAGAGCATCA
GACCTTTGAAGACCCTGATAGTGCCGTTGATGACCGAGACAGTGACTACCGCAGTGAGACCAGCAATAGC
GCCCCACCTCCTTACCACACGACTACCCAGCCCAACGCTTCTGTACACCAGTTCCCTGTTCCTGTGCGGC
TGCCACAGCAGCTCTTTCTTCAAGGCAGTTCCCATGACTCTTGCAATGACTCTATGCAGAGTTACGACCT
TGATTATCCAGAGCGTCGGGCCCTCAGCCCTACCAGCAGTAGTAGGTATGGCTCCTCCTGTAATGTGAGT
CAAGGAAGCTCTCTGCTGAGTGAGCTGGACCAGTATCATGAGCAAGATGATGATGGTCGGGAGAGGGACT
CCATTCATTCTAGTCATAGCTATGGCAGCCTCTCCAAAGATGGCCAGGCTGGTTTGGGAGAACAAGAGAA
AGCCTTGGAAGTGACATGTGAATCAGAAAAAGAGAAAACAGGTGAATCCAAGGAGATGAGAGATGATGCT
ACAATCCACCCTCCTTCAGATCTGGTGCTGCATAAGGACCATGTCCTAGGACCCCAGGAGAGTCTTCCTG
AGGAGACCGCATCATCGCCATTTACCCAGGCCAGAGCACACTGGTTCCGAGCGGTTACCAAGGTCCGACT
CCAACTGCAGGAGATTTCAGATGATGGTGACCCCTCCTTGCCTCAGTGGCTCCCAGAAGGGCCAGCTGGA
GGGCTCTATGGCATTGACAGCATGCCAGATCTACGAAGGAAGAAGCCACTGCCACTTGTCAGTGATCTGT
CACTGGTCCAGTCACGGAAAGCTGGGATTACATCTGCTATGGCTACACGTACCTCTCTCAAGGATGAAGA
ACTGAAATCTCATGTGTATAAGAAAACTCTGCAGGCCTTAATCTACCCCATCTCGTGTACCACGCCCCAC
AACTTTGAGGTCTGGTCTGCCACTACACCTACCTATTGCTATGAGTGTGAAGGCTTGCTCTGGGGCCTTG
CCCGGCAAGGCATGCGCTGCAGCGAGTGTGGAGTCAAGTGCCATGAGAAGTGCCAGGACCTGCTCAATGC
TGACTGCCTACAGCGGGCTGCTGAAAAGAGCTCTAAGCATGGAGCTGAGGACCGAACTCAGAACATTATC
ATGGCCATGAAGGACCGTATGAAGATCCGAGAACGGAATAAACCAGAGATCTTTGAGGTTATCCGGGATG
TGTTCACAGTGAGCAAAGTTGCGCATGTGCAGCAGATGAAAACAGTAAAGCAGAGTGTCCTGGATGGCAC
CTCCAAGTGGTCAGCCAAAATTACCATCACGGTGGTTTGTGCCCAGGGCCTACAAGCCAAAGACAAGACA
GGATCCAGTGACCCTTATGTGACTGTGCAAGTTGGGAAAACCAAGAAGCGCACCAAGACCATTTTTGGAA
ATTTGAATCCTGTTTGGGAAGAGAAGTTCCATTTTGAGTGCCACAACTCTTCTGATCGAATTAAGGTACG
CGTGTGGGATGAGGATGATGACATCAAGTCCAGAGTAAAGCAGCGGCTAAAGCGAGAGTCAGATGATTTC
CTTGGCCAAACTATCATTGAAGTTCGAACGCTGAGTGGAGAGATGGATGTCTGGTACAATCTGGAGAAGA
GAACAGACAAGTCAGCTGTCTCAGGGGCTATCCGACTTCAAATCAGTGTGGAGATCAAGGGGGAGGAGAA
GGTAGCCCCATACCATGTACAATATACATGTCTCCATGAGAACCTTTTCCATTACCTCACAGACATTCAG
GGCAGTGGAGGAGTCTGGATCCCAGAGGCTCGGGGGGACGATGCATGGAAGGTGTACTTTGATGAGACAG
CCCAAGAAATTGTGGATGAATTCGCTATGCGCTATGGCATCGAGTCCATTTATCAGGCCATGACGCACTT
TGCATGTTTGTCATCCAAGTACATGTGTCCTGGTGTACCAGCCGTGATGAGCACCTTACTGGCCAACATC
AATGCCTATTATGCTCACACAACTGCCTCCACTAACGTCTCTGCATCTGATCGTTTTGCAGCCTCCAACT
TTGGTAAAGAAAGATTTGTAAAACTGCTGGACCAGCTACACAACTCACTGAGGATAGACCTCTCTACATA
CAGGAATAACTTTCCTGCTGGGAGCCCTGAGCGGCTTCAGGATTTAAAGTCTACAGTGGATTTGCTGACC
AGCATTACTTTCTTCAGGATGAAGGTGCAAGAACTTCAGAGCCCTCCAAGAGCCAGCCAGGTGGTAAAGG
ACTGTGTGAAAGCCTGCTTGAACTCTACATATGAATACATCTTCAACAACTGCCATGACCTCTACAGTCA
CCAGTATCAGCTGCAGGAACAACCTCTAGAGGAACCAGGGCCCAGCATTCGGAACTTGGATTTCTGGCCC
AAACTTATCACACTCATTGTTTCGATCATAGAGGAGGATAAGAATTCCTACACACCTGTTCTGAGCCAGT
TTCCTCAGGAGTTGAACGTAGGAAAAGTCAGTGCAGAAGTGATGTGGCATCTGTTTGCTCAAGACATGAA
ATATGCACTGGAGGAACACGAGAAAGACCGGCTGTGTAAGAGTGCTGACTACATGAACCTGCACTTCAAG
GTGAAGTGGCTCCACAATGAATATGTGCGCGATCTGCCTGCCCTCCAGGGGCAAGTGCCTGAGTACCCAG
CGTGGTTTGAGCAGTTTGTGCTACAGTGGCTAGATGAGAATGAAGATGTGTCACTGGAATTCCTTCGTGG
GGCCTTGGAACGAGATAAGAAGGATGGGTTCCAGCAGACATCAGAGCATGCCTTGTTTTCCTGTTCTGTG
GTGGATGTCTTTACACAACTCAACCAGAGCTTTGAGATCATCCGGAAGTTGGAATGTCCAGACCCCAACA
TCCTTGCCCACTACATGAGAAGGTTTGCTAAGACCATTGGGAAAGTGCTGATGCAGTATGCAGACATCTT
ATCAAAGAACTTCCCAGCTTACTGCACAAAGGAGAGACTGCCCTGTATCCTGATGAACAACATGCAGCAA
CTGAGGGTCCAGCTGGAGAAAATGTTTGAGGCCATGGGAGGCAAAGAGCTGGACTCCGAAGCTGCAGACA
GTCTGAAGGAGCTGCAGGTGAAACTGAATACAGTTCTGGATGAGCTTAGCATGGTGTTTGGAAACAGCTT
CCAGGTGCGGATTGATGAATGTGTTCGACAAATGGCTGACATCCTGGGCCAAGTTCGGGGCACAGGGAAT
GCATCCCCTAACGCCAGGGCCTCGGTGGCTCAGGATGCAGATAGTGTGCTGCGACCTCTCATGGACTTCC
TGGATGGCAACCTCACGCTGTTTGCCACTGTGTGTGAGAAGACAGTTCTGAAGCGGGTCCTGAAGGAGCT
CTGGCGGGTGGTGATGAACACCATGGAGCGGGTTATTGTCCTGCCCCCACTCACTGACCAGACGGGCACC
CAGCTGATCTTAACTGCTGCCAAGGAGCTGAGCCAGCTTTCCAAACTCAAGGACCACATGGTACGGGAGG
AAACACGGAATCTCACTCCAAAGCAGTGTGCTGTCCTCGACTTGGCCTTGGACACCATCAAGCAATACTT
CCATGCAGGAGGCAATGGTCTGAAGAAAACCTTCCTGGAAAAGAGCCCAGACCTGCAGTCTCTGCGTTAT
GCCCTCTCTCTGTATACACAGACTACAGACACTCTCATCAAGACATTTGTGCGCTCACAGACTGCCCAGG
GGGCTGGTGTGGATGACCCCGTGGGAGAAGTCTCTATTCAGGTGGACTTATTTACACATCCTGGCACTGG
GGAGCATAAGGTCACAGTGAAAGTGGTAGCAGCCAATGACCTCAAGTGGCAGACAGCGGGTATGTTCCGG
CCTTTTGTGGAAGTGACCATGGTTGGCCCACACCAAAGTGATAAGAAGAGGAAGTTCACAACCAAGTCTA
AAAGTAACAACTGGACTCCCAAGTACAACGAGACGTTTCACTTCCTCCTGGGAAATGAAGAGGGTCCAGA
GGCCTATGAATTGCAGATCTGTGTGAAGGATTACTGCTTTGCCCGGGAGGATCGTGTGATAGGACTGGCA
GTGATGCCCCTGAGGGATGTGGCAGCTAAGGGCAGCTGTGCCTGCTGGTGCCCACTGGGCCGGAAGATCC
ATATGGATGAGACAGGCATGACCATTCTCCGGATTCTGTCTCAGAGGAGCAATGACGAGGTAGCCCGAGA
GTTCGTGAAGCTCAAATCAGAGTCTCGATCCACAGAGGAAGGGAGCTGA

Translation (1602 aa):
MSLLCVRVKRAKFQGSPDKFNTYVTLKVQNVKSTTVAVRGDQPSWEQDFMFEISRLDLGLSVEVWNKGLI
WDTMVGTVWIALKTIRQSDEEGPGEWSTLEAETLMKDDEICGTKNPTPHKILLDTRFELPFDIPEEEARY
WTYKLEQINALADDNEYSSQEESQRKPLPTAAAQCCHWTYLGWGEHQTFEDPDSAVDDRDSDYRSETSNS
APPPYHTTTQPNASVHQFPVPVRLPQQLFLQGSSHDSCNDSMQSYDLDYPERRALSPTSSSRYGSSCNVS
QGSSLLSELDQYHEQDDDGRERDSIHSSHSYGSLSKDGQAGLGEQEKALEVTCESEKEKTGESKEMRDDA
TIHPPSDLVLHKDHVLGPQESLPEETASSPFTQARAHWFRAVTKVRLQLQEISDDGDPSLPQWLPEGPAG
GLYGIDSMPDLRRKKPLPLVSDLSLVQSRKAGITSAMATRTSLKDEELKSHVYKKTLQALIYPISCTTPH
NFEVWSATTPTYCYECEGLLWGLARQGMRCSECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQNII
MAMKDRMKIRERNKPEIFEVIRDVFTVSKVAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKT
GSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNSSDRIKVRVWDEDDDIKSRVKQRLKRESDDF
LGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLQISVEIKGEEKVAPYHVQYTCLHENLFHYLTDIQ
GSGGVWIPEARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFACLSSKYMCPGVPAVMSTLLANI
NAYYAHTTASTNVSASDRFAASNFGKERFVKLLDQLHNSLRIDLSTYRNNFPAGSPERLQDLKSTVDLLT
SITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHDLYSHQYQLQEQPLEEPGPSIRNLDFWP
KLITLIVSIIEEDKNSYTPVLSQFPQELNVGKVSAEVMWHLFAQDMKYALEEHEKDRLCKSADYMNLHFK
VKWLHNEYVRDLPALQGQVPEYPAWFEQFVLQWLDENEDVSLEFLRGALERDKKDGFQQTSEHALFSCSV
VDVFTQLNQSFEIIRKLECPDPNILAHYMRRFAKTIGKVLMQYADILSKNFPAYCTKERLPCILMNNMQQ
LRVQLEKMFEAMGGKELDSEAADSLKELQVKLNTVLDELSMVFGNSFQVRIDECVRQMADILGQVRGTGN
ASPNARASVAQDADSVLRPLMDFLDGNLTLFATVCEKTVLKRVLKELWRVVMNTMERVIVLPPLTDQTGT
QLILTAAKELSQLSKLKDHMVREETRNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRY
ALSLYTQTTDTLIKTFVRSQTAQGAGVDDPVGEVSIQVDLFTHPGTGEHKVTVKVVAANDLKWQTAGMFR
PFVEVTMVGPHQSDKKRKFTTKSKSNNWTPKYNETFHFLLGNEEGPEAYELQICVKDYCFAREDRVIGLA
VMPLRDVAAKGSCACWCPLGRKIHMDETGMTILRILSQRSNDEVAREFVKLKSESRSTEEGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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