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Report for CCDS51126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51126.1 Public Mus musculus 4 Ggh 23 108 98 CCDS HistoryNCBI Gene:14590Re-query CCDS DB by CCDS ID:51126.1Re-query CCDS DB by GeneID:14590See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098242.3 ENSMUSP00000095843.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098242.3Link to Ensembl Protein Viewer:ENSMUSP00000095843.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098242Re-query CCDS DB by Protein ID:ENSMUSP00000095843
Original member Current member NCBI NM_010281.2 NP_034411.2 Accepted alive Link to Nucleotide Sequence:NM_010281.2Link to Protein Sequence:NP_034411.2Re-query CCDS DB by Nucleotide ID:NM_010281Re-query CCDS DB by Protein ID:NP_034411Link to BLAST:NP_034411.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034411.2 317 Q9Z0L8-1 317 100% 0 0

Chromosomal Locations for CCDS 51126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 20042174 20042282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20046203 20046314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20049792 20049842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20052664 20052748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20054064 20054202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20057937 20058043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20058139 20058229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20063999 20064136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20065740 20065861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGCGAACCTGGGCTACCTGCTGTGCTTGTTGGGTTTGCTACTATGCGGGCTTTCAAGTCCCGGGATGT
CCAGACCCTACAACCATGGCTCCGAGAGGCCCATCATCGGAGTAGTAATGCAAGAATGTTTTGGGAAAAT
GGCGAAGTTGGGAAACTACTACATTGCTGCATCCTATGTGAAGTATATAGAGTCTGCAGGTGCACGAGTT
GTGCCCATAAGGCCCGATCTTAGTGATGCAGAGTATGAAGAACTTTTTAGATCTATTAATGGAGTTCTCC
TTCCTGGAGGAGGTGCTAACCTAACAGATTCAGGTTATTCCCGAGTGGCCAAAATATTTTTCAGCAAGGC
TCTAGAGAGCTTTGATAATGGAGACCATTTTCCTGTGTGGGGAACATGCCTTGGATTTGAGGAGCTTTCT
GTCCTGGTTAGTGGAGAGAACTTACTAACGAGTACAGACACTAAGTCAAAGAAATTGCCCTTGAACTTCA
CTGAAGGTGCAAGGAAGAGCAGAATGTTCAAACATTTTCCTACTGAATTATTGGATTCATTAGCATTAGA
AAATCTGACCGCAAATTTTCACAAATGGAGCCTCTCTGTGAAGAATTTTACAGAAAATGAAAAGTTAAAG
AAGTTTTTCAATATATTAACAACCAATACAGATGGCAAAACTGAGTTCATTTCATCCATGGAAGGATTTA
AGTATCCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGGCAT
TTCTCATGCACCAAATGCTGTGAAGACTTCATTCTACTTAGCAGAATTTTTAGTTTCTGAAGCTCGGAAG
AACAGTCACCACTTTGAGAACGTGGTTAAGGAGACGGCATCCTTGATTTACAAGTTCAATCCAATTTATA
CTGGAAATATTTCTTCATTTCAGCAAGCTTATATGTTTGACTGA

Translation (317 aa):
MANLGYLLCLLGLLLCGLSSPGMSRPYNHGSERPIIGVVMQECFGKMAKLGNYYIAASYVKYIESAGARV
VPIRPDLSDAEYEELFRSINGVLLPGGGANLTDSGYSRVAKIFFSKALESFDNGDHFPVWGTCLGFEELS
VLVSGENLLTSTDTKSKKLPLNFTEGARKSRMFKHFPTELLDSLALENLTANFHKWSLSVKNFTENEKLK
KFFNILTTNTDGKTEFISSMEGFKYPVYAVQWHPEKAAFEWKNLGGISHAPNAVKTSFYLAEFLVSEARK
NSHHFENVVKETASLIYKFNPIYTGNISSFQQAYMFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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