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Report for CCDS50997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50997.1 Public Mus musculus 3 Ciart 23 108 98 CCDS HistoryNCBI Gene:229599Re-query CCDS DB by CCDS ID:50997.1Re-query CCDS DB by GeneID:229599See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036418.9 ENSMUSP00000049308.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036418.9Link to Ensembl Protein Viewer:ENSMUSP00000049308.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000036418Re-query CCDS DB by Protein ID:ENSMUSP00000049308
Original member Current member EBI ENSMUST00000159739.7 ENSMUSP00000124943.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159739.7Link to Ensembl Protein Viewer:ENSMUSP00000124943.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159739Re-query CCDS DB by Protein ID:ENSMUSP00000124943
Original member NCBI NM_001033302.2 NP_001028474.1 Updated not alive Link to Nucleotide Sequence:NM_001033302.2Link to Protein Sequence:NP_001028474.1Re-query CCDS DB by Nucleotide ID:NM_001033302Re-query CCDS DB by Protein ID:NP_001028474
Current member NCBI NM_001033302.3 NP_001028474.1 Accepted alive Link to Nucleotide Sequence:NM_001033302.3Link to Protein Sequence:NP_001028474.1Re-query CCDS DB by Nucleotide ID:NM_001033302Re-query CCDS DB by Protein ID:NP_001028474Link to BLAST:NP_001028474.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028474.1 375 Q3TQ03 375 100% 0 0

Chromosomal Locations for CCDS 50997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95878634 95879149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95880409 95880520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95880635 95880713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95880983 95881058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95881181 95881525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGATTCTCCATCTAGTGTTTCTTCTTATTCCTCCTCCTCCCTCTCCCCATCATTTTCCACGTCCTCTG
TGAACAGTGACTTTAGCTTCCCTTCTGATAACGAGAGGGAGGGCAAGGGCACCCATGAGCTCAGGCCAGA
CACTGTGGGTCAGAGAGGAGGTTCCAGGCCCAGTCCAGGCCCTATCCGCTGCAGACATCGACCCAGGGTT
TCTAGTAACCAACATACAGCACCTCATCTGGAACAGCAAGGATCTGAAGTCAAGAGATCAAGAGACGGTG
AACAGGAGACGAGTCTGAACACCCAAGGATGTACTACAGAGGGAGATCTGCTCTTTGCTCAAAAGTGTAA
AGAACTCCAAGGGTTCATACGGCCCCTCACAGACCTACTGAACGGACTCAAGATGGGTCGCTTTGACAGA
GGATTAAGTAGCTTCCAACAGAGTGTGGCCATGGACCGGATCCAGCGCATAGTGGGTGTTTTACAGAAGC
CTCAGATGGGAGAACGTTATCTAGGAACCTTGCTGCAGGTGGAAGGGATGTTAAAGACTTGGTTTCCTCA
CATAGCTGCCCAGAAGTCATCCTCAGGAGGTAGCCGGCACCAGATAAGCAAGCACTTTCCCAGCCACCAC
GGTGACCCCGGGGCTGCTTCTCCTGCACCTCTCCTAGAGAAGATGGGCCAAACACAGCTGGGACATTTAG
TTTTGAAACCAAAGCAGCCTTGGCATCTCACTGGATGGCCAGCTATGAACCTCACCTGGATTCATAGCAC
TCCAATTTGTAACCCTCCCCTCAGCTCCCAAGGCTCCGCCTCTGGCCACAGCCCCATAGGCACTGGAGCC
AGCATTGGTGTCATCCTTGTCCTCCAGAAAGGAGGACAGCCCTTCACCCATTCTGCCCCGGGCACTCCGG
TCCCACCAACTCCACTGTCTCCTGTCGTCCCTGGTGATCTGAAGAAACTGCCTGGCGAGGAGCCTCGTTG
CCACAGTTTGCCAGTAACACTGCCATCAGACTGGAGTTGCATCCTATGTCCGCCTGTCCTGCCTACCACA
GACAGAGAGATGACTAAAGGACACCCAGAGCCACAGATGACTAGCCATCCCCCAGTTGCTCCGGATCCTC
AGCCCTAA

Translation (375 aa):
MDSPSSVSSYSSSSLSPSFSTSSVNSDFSFPSDNEREGKGTHELRPDTVGQRGGSRPSPGPIRCRHRPRV
SSNQHTAPHLEQQGSEVKRSRDGEQETSLNTQGCTTEGDLLFAQKCKELQGFIRPLTDLLNGLKMGRFDR
GLSSFQQSVAMDRIQRIVGVLQKPQMGERYLGTLLQVEGMLKTWFPHIAAQKSSSGGSRHQISKHFPSHH
GDPGAASPAPLLEKMGQTQLGHLVLKPKQPWHLTGWPAMNLTWIHSTPICNPPLSSQGSASGHSPIGTGA
SIGVILVLQKGGQPFTHSAPGTPVPPTPLSPVVPGDLKKLPGEEPRCHSLPVTLPSDWSCILCPPVLPTT
DREMTKGHPEPQMTSHPPVAPDPQP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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