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Report for CCDS50957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50957.1 Public Mus musculus 3 Pklr 23 108 98 CCDS HistoryNCBI Gene:18770Re-query CCDS DB by CCDS ID:50957.1Re-query CCDS DB by GeneID:18770See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107482.9 ENSMUSP00000103106.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107482.9Link to Ensembl Protein Viewer:ENSMUSP00000103106.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107482Re-query CCDS DB by Protein ID:ENSMUSP00000103106
Original member Current member NCBI NM_001099779.1 NP_001093249.1 Accepted alive Link to Nucleotide Sequence:NM_001099779.1Link to Protein Sequence:NP_001093249.1Re-query CCDS DB by Nucleotide ID:NM_001099779Re-query CCDS DB by Protein ID:NP_001093249Link to BLAST:NP_001093249.1

Chromosomal Locations for CCDS 50957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89136631 89136637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89137224 89137406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89141315 89141406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89141506 89141637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89141763 89141949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89142206 89142476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89142592 89142742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89142962 89143114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89143210 89143376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89144826 89145007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89145467 89145573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGAAGGGCCAGCAGGATACCTGAGACGTGCCAGTGTGGCCCAGCTGACCCAGGAGCTGGGCACTGCCT
TCTTCCAGCAGCAGCAACTGCCCGCAGCTATGGCGGACACCTTCCTGGAACACCTCTGCCTTCTGGATAT
CGACTCAGAGCCTGTGGCCGCTAGGAGCACCAGCATCATTGCCACCATCGGGCCGGCGTCACGCTCTGTG
GACCGCCTCAAGGAGATGATCAAGGCAGGGATGAACATTGCACGACTCAACTTCTCCCATGGCTCCCATG
AGTACCATGCAGAGTCCATCGCCAACATTCGGGAGGCGGCTGAAAGCTTTGCAACCTCCCCACTCAGCTA
CAGACCCGTGGCCATCGCCCTGGACACCAAGGGTCCCGAGATACGCACTGGAGTCCTGCAGGGGGGTCCA
GAGTCGGAGGTGGAAATTGTGAAGGGTTCACAGGTGCTGGTGACTGTGGATCCGAAGTTCCGGACAAGGG
GCGATGCAAAGACAGTGTGGGTGGACTACCACAATATCACCCAGGTCGTTGCAGTGGGGGGCCGCATCTA
CATTGACGACGGGCTCATCTCCTTAGTGGTGCGGAAAATTGGCCCAGAGGGACTGGTGACCGAAGTGGAA
CACGGTGGTTTCTTGGGCAACAGGAAGGGTGTGAACTTGCCAAATGCCGAGGTGGACCTGCCTGGGCTAT
CAGAGCAAGATCTTTTGGATCTGCGCTTCGGGGTGGAGCATAATGTGGACATCATCTTTGCCTCCTTTGT
ACGAAAAGCCAGTGATGTGGTGGCAGTCCGAGATGCCCTAGGGCCAGAAGGACGGGGCATCAAAATTATC
AGCAAAATCGAGAACCATGAAGGCGTGAAGAAGTTTGATGAGATCCTAGAAGTGAGCGATGGCATCATGG
TGGCTCGGGGTGACCTTGGCATTGAGATCCCAGCAGAGAAGGTTTTCTTGGCTCAGAAGATGATGATTGG
ACGCTGCAACCTGGCTGGCAAGCCTGTCGTTTGTGCCACACAGATGCTGGAGAGCATGATCACTAAGGCT
CGACCAACTCGGGCGGAGACAAGCGATGTGGCCAATGCTGTGCTGGATGGGGCTGACTGTATCATGCTGT
CTGGAGAGACCGCCAAAGGCAGTTTCCCCGTGGAGGCTGTAAAGATGCAACATGCGATTGCCCGGGAGGC
AGAGGCCGCTGTGTACCACCGCCAGTTGTTTGAGGAGCTACGCCGGGCAGCGCCGCTGAGCCGTGACCCA
ACCGAGGTCACTGCAATTGGAGCCGTGGAGGCTTCCTTCAAGTGCTGTGCCGCAGCCATCATTGTGCTGA
CAAAGACTGGCCGCTCAGCTCAGCTTCTGTCTCGCTACCGACCTCGGGCTGCTGTCATTGCTGTGACTCG
TTCTGCCCAGGCTGCCCGACAGGTCCACCTGTCCCGAGGAGTCTTCCCCTTGCTCTACCGTGAGCCTCCA
GAGGCTGTCTGGGCAGATGATGTGGACCGAAGGGTCCAATTTGGCATCGAAAGTGGAAAGCTTCGTGGCT
TCCTCCGAGTTGGTGATCTGGTGATTGTGGTGACAGGCTGGCGACCTGGCTCTGGCTATACCAACATTAT
GCGGGTGCTGACCATATCCTGA

Translation (543 aa):
MEGPAGYLRRASVAQLTQELGTAFFQQQQLPAAMADTFLEHLCLLDIDSEPVAARSTSIIATIGPASRSV
DRLKEMIKAGMNIARLNFSHGSHEYHAESIANIREAAESFATSPLSYRPVAIALDTKGPEIRTGVLQGGP
ESEVEIVKGSQVLVTVDPKFRTRGDAKTVWVDYHNITQVVAVGGRIYIDDGLISLVVRKIGPEGLVTEVE
HGGFLGNRKGVNLPNAEVDLPGLSEQDLLDLRFGVEHNVDIIFASFVRKASDVVAVRDALGPEGRGIKII
SKIENHEGVKKFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKA
RPTRAETSDVANAVLDGADCIMLSGETAKGSFPVEAVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDP
TEVTAIGAVEASFKCCAAAIIVLTKTGRSAQLLSRYRPRAAVIAVTRSAQAARQVHLSRGVFPLLYREPP
EAVWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLTIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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