NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50952.1 Public Mus musculus 3 Rit1 23 108 98 CCDS HistoryNCBI Gene:19769Re-query CCDS DB by CCDS ID:50952.1Re-query CCDS DB by GeneID:19769See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172252.1 ENSMUSP00000130464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172252.1Link to Ensembl Protein Viewer:ENSMUSP00000130464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172252Re-query CCDS DB by Protein ID:ENSMUSP00000130464
Original member NCBI NM_001163310.1 NP_001156782.1 Updated not alive Link to Nucleotide Sequence:NM_001163310.1Link to Protein Sequence:NP_001156782.1Re-query CCDS DB by Nucleotide ID:NM_001163310Re-query CCDS DB by Protein ID:NP_001156782
Current member NCBI NM_001163310.2 NP_001156782.1 Accepted alive Link to Nucleotide Sequence:NM_001163310.2Link to Protein Sequence:NP_001156782.1Re-query CCDS DB by Nucleotide ID:NM_001163310Re-query CCDS DB by Protein ID:NP_001156782Link to BLAST:NP_001156782.1

Chromosomal Locations for CCDS 50952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88717604 88717658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88725995 88726068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88726280 88726471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88729112 88729342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGACAATGCAGTTCATCAGCCACCGATTCCCAGAAGACCATGACCCCACCATTGAAGATGCTTATAAGA
TCCGGATCCGCATTGATGATGAACCTGCCAATCTGGACATCCTGGACACAGCAGGACAGGCAGAGTTTAC
AGCCATGCGGGATCAGTATATGAGGGCAGGAGAAGGATTCATCATCTGTTACTCCATCACGGATCGTCGA
AGTTTCCACGAAGTTCGGGAGTTTAAACAACTGATTTACCGGGTCCGACGCACCGATGATACACCGGTGG
TTCTTGTGGGGAACAAGTCTGACCTAAAGCAGCTGAGGCAGGTCTCCAAGGAAGAGGGATTGTCTCTGGC
TCGAGAATTCAGTTGTCCCTTTTTTGAGACCTCAGCTGCCTACCGTTACTACATCGACGACGTTTTCCAC
GCCCTCGTCCGGGAGATCCGTAAGAAAGAGAAGGAGCTAGTACTGGCCATGGAGAAGAAGGCCAAACCCA
AGAACAGCGTATGGAAGAGGCTGAAGTCACCGTTCAGGAGGAAGAAAGACTCGGTCACCTGA

Translation (183 aa):
MTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRR
SFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVFH
ALVREIRKKEKELVLAMEKKAKPKNSVWKRLKSPFRRKKDSVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH