NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50871.1 Public Mus musculus 3 Pde7a 23 108 98 CCDS HistoryNCBI Gene:18583Re-query CCDS DB by CCDS ID:50871.1Re-query CCDS DB by GeneID:18583See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099195.9 ENSMUSP00000096800.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099195.9Link to Ensembl Protein Viewer:ENSMUSP00000096800.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099195Re-query CCDS DB by Protein ID:ENSMUSP00000096800
Original member NCBI NM_001122759.2 NP_001116231.1 Updated not alive Link to Nucleotide Sequence:NM_001122759.2Link to Protein Sequence:NP_001116231.1Re-query CCDS DB by Nucleotide ID:NM_001122759Re-query CCDS DB by Protein ID:NP_001116231
Current member NCBI NM_001122759.3 NP_001116231.1 Accepted alive Link to Nucleotide Sequence:NM_001122759.3Link to Protein Sequence:NP_001116231.1Re-query CCDS DB by Nucleotide ID:NM_001122759Re-query CCDS DB by Protein ID:NP_001116231Link to BLAST:NP_001116231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116231.1 482 P70453-2 482 100% 0 0

Chromosomal Locations for CCDS 50871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 19227636 19227841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19229688 19229768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19230256 19230352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19230957 19231101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19233100 19233191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19233676 19233807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19235913 19236013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19236444 19236539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19241146 19241209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19243050 19243201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19256778 19256861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19260232 19260292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19310864 19311001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGAAGTATGCTACCAGCTGCCGGTGCTGCCCCTGGACAGGCCGGTCCCCCAGCACGTCCTCAGCCGCC
GAGGAGCCATCAGCTTCAGCTCCAGCTCCGCGCTCTTCGGCTGCCCGCATCCCCGGCAGCTCTCGCAGAG
ACGTGGAGCTATTTCCTATGACAGTTCTGATCAGACTGCGTTATATATTCGTATGCTAGGAGATGTCCGC
GTGAGGAGCCGAGCAGGATTTGAAACAGAAAGAAGAGGTTCCCATCCGTACATTGACTTCCGTATTTTTC
ACTCTCAATCTGACATTGAAGCATCAGTCTCCGCCAGGAACATCAGAAGGTTACTAAGTTTCCAGCGATA
TCTCAGATCCTCACGAGTTTTTCGGGGTGCCACAGTTTGTAGTTCTCTAGACATTTTAGATGAGGATTAC
AATGGACAAGCCAAGTGTATGCTGGAAAAAGTTGGAAATTGGAATTTTGATATCTTTCTGTTTGATAGAC
TAACAAATGGAAATAGTCTAGTAAGCCTAACCTTTCATTTATTTAGTCTTCATGGATTGATTGAGTACTT
CCATTTAGATATGGTGAAACTCCGTCGGTTTTTAGTTATGATTCAAGAAGATTACCACAGTCAAAATCCT
TACCACAATGCAGTCCATGCTGCAGACGTTACTCAGGCCATGCACTGTTACTTAAAGGAACCTAAGCTTG
CCAGTTCTGTCACTCCTTGGGATATCTTGCTGAGTTTAATTGCAGCCGCCACTCACGATCTGGATCACCC
AGGTGTTAATCAGCCGTTTCTTATTAAAACCAACCATTATCTAGCAACTTTATACAAGAATTCCTCAGTC
CTGGAGAATCACCACTGGAGATCTGCAGTGGGCTTGTTAAGAGAATCTGGTTTGTTCTCACACTTGCCAT
TGGAAAGCAGGCAAGAGATGGAGGCTCAGATAGGTGCTTTGATATTAGCCACGGATATCAGTCGCCAGAA
CGAGTACCTGTCATTGTTTAGATCTCACTTGGATAAAGGTGACTTACACCTTGACGATGGCAGACATAGG
CATTTGGTTCTACAGATGGCCTTGAAATGTGCTGATATTTGTAACCCATGTCGGAACTGGGAATTAAGCA
AGCAGTGGAGTGAAAAAGTAACGGAGGAATTCTTCCACCAAGGAGATATAGAAAAAAAGTACCATTTGGG
TGTGAGTCCACTTTGTGATCGTCAGACTGAGTCTATTGCCAACATCCAGATTGGTTTTATGACTTACCTA
GTGGAGCCTTTATTTACAGAGTGGGCCAGGTTTTCAGACACACGGCTGTCACAGACGATGCTTGGACATG
TGGGGCTGAATAAAGCCAGCTGGAAGGGACTGCAGAGACAACAGCCCAGCAGCGAGGATGCCAATGCTGC
ATTTGAGTTGAACTCACAGTTACTAACTCAGGAAAATCGGTTATCATAA

Translation (482 aa):
MEVCYQLPVLPLDRPVPQHVLSRRGAISFSSSSALFGCPHPRQLSQRRGAISYDSSDQTALYIRMLGDVR
VRSRAGFETERRGSHPYIDFRIFHSQSDIEASVSARNIRRLLSFQRYLRSSRVFRGATVCSSLDILDEDY
NGQAKCMLEKVGNWNFDIFLFDRLTNGNSLVSLTFHLFSLHGLIEYFHLDMVKLRRFLVMIQEDYHSQNP
YHNAVHAADVTQAMHCYLKEPKLASSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNSSV
LENHHWRSAVGLLRESGLFSHLPLESRQEMEAQIGALILATDISRQNEYLSLFRSHLDKGDLHLDDGRHR
HLVLQMALKCADICNPCRNWELSKQWSEKVTEEFFHQGDIEKKYHLGVSPLCDRQTESIANIQIGFMTYL
VEPLFTEWARFSDTRLSQTMLGHVGLNKASWKGLQRQQPSSEDANAAFELNSQLLTQENRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH