NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50763.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50763.1 Public Mus musculus 2 Snta1 23 108 98 CCDS HistoryNCBI Gene:20648Re-query CCDS DB by CCDS ID:50763.1Re-query CCDS DB by GeneID:20648See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50763.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109728.7 ENSMUSP00000105350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109728.7Link to Ensembl Protein Viewer:ENSMUSP00000105350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109728Re-query CCDS DB by Protein ID:ENSMUSP00000105350
Original member Current member NCBI NM_009228.2 NP_033254.2 Accepted alive Link to Nucleotide Sequence:NM_009228.2Link to Protein Sequence:NP_033254.2Re-query CCDS DB by Nucleotide ID:NM_009228Re-query CCDS DB by Protein ID:NP_033254Link to BLAST:NP_033254.2

Chromosomal Locations for CCDS 50763.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154376816 154376908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154377007 154377194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154378008 154378204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154380674 154380804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154380911 154381118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154383780 154383984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154403722 154403907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154407680 154407971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGCGTCAGGCAGGCGCGCTCCGCGCACCGGGTTGCTGGAACTGCGCTGCGGGGCGGGCTCCGGGGCGG
GTGGCGAGCGGTGGCAGCGGGTGTTGCTCTCTCTGGCGGAGGACGCGCTGACCGTGAGTCCCGCCGACGG
CGAGCCCGGCCCGGAGCCGGAGCCCGCGCAGCTCAACGGCGCCGCTGAGCCCGGCGCGGCGCCCCCACAG
CTGCCAGAAGCGCTGCTGCTCCAGCGGCGCCGCGTGACGGTGCGCAAGGCCGACGCCGGCGGGCTGGGCA
TCAGCATCAAGGGGGGCCGGGAAAACAAGATGCCTATTCTCATTTCCAAGATCTTCAAGGGACTGGCAGC
AGACCAGACGGAGGCCCTTTTTGTTGGGGATGCCATCCTGTCTGTGAATGGTGAAGATTTGTCCTCTGCC
ACCCACGATGAAGCGGTACAGGCCCTCAAGAAGACAGGCAAGGAGGTTGTGTTGGAGGTTAAGTACATGA
AGGAGGTCTCACCCTATTTCAAGAATTCTGCTGGAGGGACCTCCGTTGGCTGGGACTCACCTCCTGCCTC
GCCTCTTCAGCGGCAGCCTTCTTCCCCTGGCCCCCAACCCCGGAACCTCAGTGAGGCCAAACACGTATCT
TTGAAGATGGCGTATGTCTCAAGGAGGTGCACCCCCACTGACCCAGAGCCCAGGTACCTGGAGATCTGTG
CAGCGGACGGCCAGGACGCTGTCTTCTTGAGGGCCAAGGATGAGGCCAGCGCAAGGTCATGGGCGGGCGC
CATCCAAGCGCAGATCGGCACATTCATACCTTGGGTCAAAGATGAGCTCCAGGCTCTGCTGACAGCCACA
GGTACAGCTGGGAGCCAGGACATCAAGCAGATTGGCTGGCTGACAGAACAGTTGCCCAGCGGGGGAACGG
CACCAACCCTGGCCCTGCTGACTGAGAAGGAGCTGCTCTTCTACTGCTCTCTCCCTCAGAGCCGAGAGGC
CCTGAGCAGGCCGACCCGCACTGCCCCGCTCATTGCCACCAGGCTGGTGCACTCAGGCCCCTCCAAGGGC
TCAGTGCCCTATGATGCAGAACTCTCCTTTGCCCTGCGCACGGGTACACGGCACGGTGTGGACACTCACC
TGTTCAGTGTGGAGTCGCCGCAAGAGCTGGCAGCCTGGACCCGACAGTTGGTGGATGGCTGTCATCGGGC
TGCTGAAGGCATACAAGAAGTGTCTACAGCCTGCACGTGGAACGGCCGTCCCTGCAGCCTGTCTGTGCAC
ATCGACAAGGGCTTCACCCTGTGGGCAGCTGAGCCTGGAGCAGCCCGAGCCATGCTGCTCCGACAGCCCT
TCGAGAAACTTCAGATGTCATCAGATGATGGCACGAGTCTCCTTTTCCTGGACTTTGGGGGTGCTGAAGG
AGAGATCCAGCTGGACCTGCACTCGTGTCCCAAAACGATGGTCTTTATCATCCACTCTTTCCTGTCCGCC
AAGGTCACCCGCTTGGGGCTCTTGGCCTAG

Translation (499 aa):
MASGRRAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQ
LPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA
THDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVS
LKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIGTFIPWVKDELQALLTAT
GTAGSQDIKQIGWLTEQLPSGGTAPTLALLTEKELLFYCSLPQSREALSRPTRTAPLIATRLVHSGPSKG
SVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGIQEVSTACTWNGRPCSLSVH
IDKGFTLWAAEPGAARAMLLRQPFEKLQMSSDDGTSLLFLDFGGAEGEIQLDLHSCPKTMVFIIHSFLSA
KVTRLGLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH