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Report for CCDS50732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50732.1 Public Mus musculus 2 Sel1l2 23 108 98 CCDS HistoryNCBI Gene:228684Re-query CCDS DB by CCDS ID:50732.1Re-query CCDS DB by GeneID:228684See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50732.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122367.7 ENSMUSP00000113800.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122367.7Link to Ensembl Protein Viewer:ENSMUSP00000113800.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122367Re-query CCDS DB by Protein ID:ENSMUSP00000113800
Original member NCBI NM_001033296.2 NP_001028468.1 Updated not alive Link to Nucleotide Sequence:NM_001033296.2Link to Protein Sequence:NP_001028468.1Re-query CCDS DB by Nucleotide ID:NM_001033296Re-query CCDS DB by Protein ID:NP_001028468
Current member NCBI NM_001033296.3 NP_001028468.1 Accepted alive Link to Nucleotide Sequence:NM_001033296.3Link to Protein Sequence:NP_001028468.1Re-query CCDS DB by Nucleotide ID:NM_001033296Re-query CCDS DB by Protein ID:NP_001028468Link to BLAST:NP_001028468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028468.1 688 Q3V172 688 100% 0 0

Chromosomal Locations for CCDS 50732.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 140229932 140230051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140230767 140230895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140240899 140241071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140243914 140243988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140244100 140244265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140245346 140245494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140247937 140248024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140248554 140248616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140255280 140255357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140256972 140257040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140262667 140262723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140263369 140263523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140265698 140265779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140265866 140265925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140266360 140266413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140275401 140275563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140285204 140285306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140304609 140304777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140340102 140340157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140389575 140389632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGAATCCCTTGGCTTTGTTAGTAGAGATATTGATCATTATCGAGGTCACAACCAAAAATACTGAAGCAG
AAAGATATAACAGAAAACAAAAAGAAGTGAATGTCACCACACAGGTATCAGTGAGCAAAGTCAAGCAATT
TTTATTGTATCTACTGGAACAAGGAAACGCAAATAAAATAACCAATAAAAGAGAAAATCCCTTAGAAAAA
AAGAAGCATCAACATAAGTTAAAAATAAAAGGAATTCAAAATAAGAATCTCCTGAAGAGAAATCAAAACT
ACTTCAAAAACCCAGCCAAGAAAAGTATCACAGATGAAGGAGATGAGTTATTTAAAATGGGCAACAAGAT
TCTCCAGGAGTCTAAAAGCCAAAAACAAAAAACAGAAGCCTACACACTCTTCACCAGAGCAGCCAACATG
GGAAATTTGAAAGCTATGGAAAAAATGGCTGATGCTTGGCTATTTGGAAGTTTCGGCATGCAAAACATAA
CAGCAGCTATTCAGTTATATGAGTCCTTGGCTAAAGAAGGATCATACAAAGCCCAAAATGCATTAGGATT
TTTATCTTCATATGGAATAGGAATGGAATATGACCAAGCCAAGGCACTGATATATTATACCTTTGGAAGT
GCTGGAGGAAGCATGATGTCCCAGATGATTCTGGGGTACAGATACTTGTCAGGAATTAACGTTCTGCAAA
ATTGTGAAGTTGCCCTAAATCATTACAAGAAAGTGGCAGATTATATTGCTGATAAATTGGAAAAAAGTGA
AGGTATTCCCGTGGAAAAAGTGAGGCTAACCGAGAGACCTGAGAATCTGAGTTCCAACAGTGAGATTTTG
GATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAAGTATCTCTTG
GACAATTACATCTAATTGGGAGAAAGGGACTAGATCAAGATTACAGTAAGGCGTTATACTACTTTCTAAA
GGCAGCAAAAGCCGGGAGTGCAAATGCCATGGCATTTATAGGAAAGATGTATTTTGAAGGGAATGCTGCT
GCACCACAAAATAACGCCACTGCCTTCAAATACTTCTCCATGGCGGCCAGCAAGGGCAACGCAATTGGCC
TTCATGGACTTGGTCTCCTTTACTTCCATGGAAAAGGTGTTCCTGTGAATTATGGTGAAGCACTTAAATA
CTTCCAGAAAGCTGCGGAGAAGGGATGGCCTAATGCACAGTTCCAGCTGGGCTTCATGTACTACTCTGGC
TCTGGAGTATGGAAGGATTATAAGCTTGCCTTCAAATACTTTTACTTGGCATCTCAGAGTGGGCAGCCTC
TTGCCATTTATTATCTAGCCGAGATGTACGCAACTGGCACTGGAGTGCTGAGATCATGCAGAACGGCCGT
GGAGCTTTACAAAGGTGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTAACGGCCTATTTCGCCTAT
AAGGATGGGGACATAGACTCTTCTCTTATTCAGTATGCATTGCTTGCCGAAATGGGATATGAAGTAGCTC
AAAGCAATTCAGCATTCATTTTGGAATCTAAAAAAGCTAAAATTCTGGGGAAAGAGAAGTTGTATCCAAT
GGCACTTCTGCTATGGAACCGAGCCGCCATTCAAGGGAACGCTTTTGCTAGAGTAAAAATTGGAGATTAC
CATTACTATGGCTACGGGACTAAGAAGGACTACGAAACAGCAGCCACACACTACAGCATCGCAGCAGACA
AGCATCACAGTGCACAAGCAATGTTCAACCTGGCATATATGTATGAACATGGCTTGGGTATTGCAAAGGA
CATTCACTTGGCCAGAAGATTGTACGACATGGCTGCTCAGACAAGCCCAGATGCTCACATACCTGTGTTC
TTTGCCCTTATGAAACTGGAAACCATGCATCTGCTCCATGATATCCTGTTTTTTAATTTTACCATGAAAT
GGAAATGGCTGAAACTGGACAGCACTGTTGGACCATACTGGGATTTATTGGTGATTGGCCTAATTGTTGC
CATGCTGATCTTCCTGCTTAGAAATCGCCATAGGTAG

Translation (688 aa):
MNPLALLVEILIIIEVTTKNTEAERYNRKQKEVNVTTQVSVSKVKQFLLYLLEQGNANKITNKRENPLEK
KKHQHKLKIKGIQNKNLLKRNQNYFKNPAKKSITDEGDELFKMGNKILQESKSQKQKTEAYTLFTRAANM
GNLKAMEKMADAWLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKALIYYTFGS
AGGSMMSQMILGYRYLSGINVLQNCEVALNHYKKVADYIADKLEKSEGIPVEKVRLTERPENLSSNSEIL
DWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAA
APQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSG
SGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAY
KDGDIDSSLIQYALLAEMGYEVAQSNSAFILESKKAKILGKEKLYPMALLLWNRAAIQGNAFARVKIGDY
HYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQTSPDAHIPVF
FALMKLETMHLLHDILFFNFTMKWKWLKLDSTVGPYWDLLVIGLIVAMLIFLLRNRHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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