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Report for CCDS50693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50693.1 Reviewed, update pending Mus musculus 2 Slc12a1 23 108 98 CCDS HistoryNCBI Gene:20495Re-query CCDS DB by CCDS ID:50693.1Re-query CCDS DB by GeneID:20495See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 50693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028630.8 ENSMUSP00000028630.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028630.8Link to Ensembl Protein Viewer:ENSMUSP00000028630.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028630Re-query CCDS DB by Protein ID:ENSMUSP00000028630
Original member Current member NCBI NM_183354.3 NP_899197.3 Pending alive Link to Nucleotide Sequence:NM_183354.3Link to Protein Sequence:NP_899197.3Re-query CCDS DB by Nucleotide ID:NM_183354Re-query CCDS DB by Protein ID:NP_899197Link to BLAST:NP_899197.3

Chromosomal Locations for CCDS 50693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125153929 125154321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125160495 125160626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125161076 125161151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125166123 125166218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125169413 125169552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125170657 125170767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125171173 125171284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125173589 125173716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125178059 125178143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125184720 125184871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125186211 125186318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125186625 125186748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125188167 125188268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125190190 125190345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125194125 125194224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125194997 125195108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125200553 125200693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125203419 125203525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125206015 125206097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125214009 125214152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125217784 125217915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125218141 125218252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125219737 125219823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125225928 125226063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125227643 125227710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125228727 125228862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3273 nt):
ATGTCGGTCAGCATCCCTTCCAACTCAGTGCCCAGTAGTGCCAGTCGCTTTCAGGTCCATGTTATAAACG
AGGGCCATGGCAGTGCGGCAGCCGTGGGCGACAGTGCAGACCCCCCACATTATGAAGAGACCTCTTTCGG
GGACGAAGCCCAAAACAGACTGAGAATCAGCTTTAGGCCTGGGAATCAGGAGTGCTATGACAATTTTCTC
CAAACTGGAGAGACTGCCAAAACAGACACCACGTTTCACGCCTACGACTCTCACACAAACACATACTACC
TACAAACCATGGACGCCGTCCCCAAGATTGAATACTACCGCAACACAGGCAGCGTGAGCGGGCCCAAGGT
CAACCGGCCCAGCCTGCTGGAGATCCACGAGCAGCTGGCTAAGAATGTGACTGTGGCCCCTGGTTCAGCT
GACAGGGTTGCTAATGGAGATGGGATGCCTGGAGATGAGCAAGCAGAAAACAAGGAAGAAGACATGACTG
GAGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTGCGATGCATGCTGAACATCTGGGGAGTCATGCT
CTTCATTCGCCTCTCCTGGATTGTAGGAGAAGCGGGAATTGGTCTTGGAGTTCTTATAATTCTTCTTTCC
ACCATGGTAACCTCTATCACTGGGTTGTCAACTTCTGCAATAGCAACAAACGGGTTTGTTCGTGGAGGTG
GAGCCTACTACCTGATTTCCCGGAGCTTAGGGCCTGAGTTCGGTGGGTCAATAGGCTTGATCTTTGCTTT
TGCCAATGCAGTGGCTGTCGCTATGTATGTGGTGGGATTCGCGGAGACTGTCGTGGATCTTCTTAAGGAG
AGCGATTCAATGATGGTGGATCCAACCAATGACATCCGCATCATCGGTTCCATCACCGTGGTGATTCTTC
TAGGAATCTCAGTAGCTGGGATGGAGTGGGAAGCAAAGGCTCAAGTCATTCTCCTGGTCATTCTTCTCAT
TGCCATTGCAAACTTCTTCATTGGAACTGTCATCCCATCCAACAATGAGAAGAAATCCAGAGGCTTCTTT
AACTACCAAGCATCTATATTTGCGGAAAACTTTGGGCCAAGCTTCACAAAGGGGGAAGGCTTCTTCTCGG
TCTTTGCCATCTTTTTCCCAGCTGCTACTGGGATTCTTGCTGGTGCCAACATCTCTGGAGACCTGGAGGA
TCCCCAGGACGCCATCCCCAGAGGGACCATGCTGGCCATCTTCATCACCACCGTGGCCTACATAGGTGTT
GCTATTTGCGTAGCCGCCTGTGTGGTCCGAGATGCCACTGGCAGCATGAATGACACCATCGTTTCTGGGA
TGAATTGCAATGGCTCTGCGGCCTGTGGGTTGGGCTACGACTTCTCAAGATGTCAACACGAGCCATGTCA
GTATGGGCTGATGAACAATTTCCAGGTCATGAGCATGGTGTCCGGGTTCGGGCCCCTCATCACTGCAGGG
ATCTTTTCGGCAACACTGTCTTCCGCCCTGGCCTCCCTCGTCAGTGCGCCCAAAGTATTCCAGGCTCTGT
GCAAGGACAACATCTTCAAAGGACTGCAGTTCTTCGCAAAGGGCTATGGGAAAAACAACGAGCCCCTGAG
AGGGTACTTCCTCACTTTTGTGATAGCCATGGCATTCATTCTCATCGCCGAGCTGAATGTCATTGCCCCC
ATCATCTCCAACTTCTTCCTGGCCTCATATGCGCTTATTAATTTCTCCTGTTTCCATGCCTCGTATGCCA
AATCTCCAGGATGGAGGCCTGCATATGGGATTTACAACATGTGGGTATCTCTTTTTGGAGCGATTTTGTG
CTGTGCAGTCATGTTTGTCATCAACTGGTGGGCAGCTGTCATCACTTATGTCATTGAGTTATTCCTCTAT
ATCTATGTGACTTATAAGAAGCCAGATGTGAACTGGGGCTCCTCCACACAGGCTCTGTCCTATGTGAGTG
CTTTAGACAACGCTCTGGAATTAACCACAGTGGAAGACCATGTGAAAAACTTCAGACCCCAGTGCATTGT
CTTAACAGGCGGACCCATGACTAGACCCGCTCTCTTGGATATAACCCACGCCTTTACGAAGAATAGTGGC
CTCTGCATCTGCTGCGAAGTCTTCGTGGGACCTCGCAAGCTGTGTGTTAAAGAGATGAACAGCGGCATGG
CTAAAAAACAGGCCTGGCTTATAAAGAACAAAATCAAAGCTTTTTATGCTGCAGTGGCTGCAGACTGCTT
CAGGGACGGTGTCCGGAGCCTCCTTCAGGCCTCAGGCTTGGGGAGAATGAAGCCAAACACTCTCGTGATT
GGATACAAAAAGAACTGGAGGAAAGCTCCCTTGTCAGAGCTGGAGAACTACGTGGGAATCATACATGACG
CCTTTGACTTTGAGATTGGCGTGGTCATAGTCAGAATCAGCCAAGGCTTTGACATCTCTCCGGTTCTCCA
GGTACAAGACGAACTGGAGAAACTGGAACAGGAGAGATTGGCTCTGGAGGCCGCAATCAAAGACAACGAG
TGTGAGGAGGGCAAGGGGGGCATCCGAGGCTTGTTTAAGAAGGCCGGCAAGCTGAACATTACCAAGCCAG
CCCCCAAGAAAGACGGCAACATCAGCAGCATCCAGTCAATGCACGTCGGGGAGTTCAATCAGAAACTGGT
GGAAGCCAGCGCTCAGTTTAAAAAGAAGCAGGGAAAAGGCACGATTGATGTTTGGTGGTTATTTGATGAT
GGAGGGTTAACACTGCTTATCCCATATATCTTGACTCTCAGAAAAAAATGGAAAGATTGTAAGTTAAGAA
TCTATGTTGGAGGAAAGATCAACCGCATCGAAGAGGAAAAAATTTCAATGGCTTCACTTCTCAGCAAATT
TAGAATAAAATTTGCAGACATCCATATAATTGGAGACATCAACATTAAGCCAAACAAAGAGAGCTGGAAA
GTCTTTGAAGAGATGATTGAACCTTATCGGCTTCATGAAAGCCACAAAGATTTGACCACTGCTGAGAAAT
TAAAAAGAGAAAGTCCATGGAAAATTACAGATGCAGAACTGGAAGCAGTCAAGGAAAAGAGTTACCGTCA
AGTTCGACTGAACGAGCTCTTACAGGAACACTCCAGAGCCGCCAACCTCATCGTGTTGAGCCTTCCAGTG
GCAAGAAAAGGATCTATTTCGGATTTGTTGTACATGGCGTGGTTAGAAATCCTGACCAAGAACCTTCCTC
CTGTGTTACTGGTTAGAGGAAATCACAAAAATGTCTTAACATTTTACTCTTAA

Translation (1090 aa):
MSVSIPSNSVPSSASRFQVHVINEGHGSAAAVGDSADPPHYEETSFGDEAQNRLRISFRPGNQECYDNFL
QTGETAKTDTTFHAYDSHTNTYYLQTMDAVPKIEYYRNTGSVSGPKVNRPSLLEIHEQLAKNVTVAPGSA
DRVANGDGMPGDEQAENKEEDMTGVVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVLIILLS
TMVTSITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVVDLLKE
SDSMMVDPTNDIRIIGSITVVILLGISVAGMEWEAKAQVILLVILLIAIANFFIGTVIPSNNEKKSRGFF
NYQASIFAENFGPSFTKGEGFFSVFAIFFPAATGILAGANISGDLEDPQDAIPRGTMLAIFITTVAYIGV
AICVAACVVRDATGSMNDTIVSGMNCNGSAACGLGYDFSRCQHEPCQYGLMNNFQVMSMVSGFGPLITAG
IFSATLSSALASLVSAPKVFQALCKDNIFKGLQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNVIAP
IISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAILCCAVMFVINWWAAVITYVIELFLY
IYVTYKKPDVNWGSSTQALSYVSALDNALELTTVEDHVKNFRPQCIVLTGGPMTRPALLDITHAFTKNSG
LCICCEVFVGPRKLCVKEMNSGMAKKQAWLIKNKIKAFYAAVAADCFRDGVRSLLQASGLGRMKPNTLVI
GYKKNWRKAPLSELENYVGIIHDAFDFEIGVVIVRISQGFDISPVLQVQDELEKLEQERLALEAAIKDNE
CEEGKGGIRGLFKKAGKLNITKPAPKKDGNISSIQSMHVGEFNQKLVEASAQFKKKQGKGTIDVWWLFDD
GGLTLLIPYILTLRKKWKDCKLRIYVGGKINRIEEEKISMASLLSKFRIKFADIHIIGDINIKPNKESWK
VFEEMIEPYRLHESHKDLTTAEKLKRESPWKITDAELEAVKEKSYRQVRLNELLQEHSRAANLIVLSLPV
ARKGSISDLLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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