NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50642.1 Public Mus musculus 2 Harbi1 23 108 98 CCDS HistoryNCBI Gene:241547Re-query CCDS DB by CCDS ID:50642.1Re-query CCDS DB by GeneID:241547See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090608.5 ENSMUSP00000088098.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090608.5Link to Ensembl Protein Viewer:ENSMUSP00000088098.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090608Re-query CCDS DB by Protein ID:ENSMUSP00000088098
Original member Current member NCBI NM_001356518.1 NP_001343447.1 Accepted alive Link to Nucleotide Sequence:NM_001356518.1Link to Protein Sequence:NP_001343447.1Re-query CCDS DB by Nucleotide ID:NM_001356518Re-query CCDS DB by Protein ID:NP_001343447Link to BLAST:NP_001343447.1
Original member Current member NCBI NM_178724.5 NP_848839.2 Accepted alive Link to Nucleotide Sequence:NM_178724.5Link to Protein Sequence:NP_848839.2Re-query CCDS DB by Nucleotide ID:NM_178724Re-query CCDS DB by Protein ID:NP_848839Link to BLAST:NP_848839.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343447.1 349 Q8BR93-1 349 100% 0 0
NP_848839.2 349 Q8BR93-1 349 100% 0 0

Chromosomal Locations for CCDS 50642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91712196 91712865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91720354 91720733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCTATTCCAATAACAGTGCTTGACTGTGATCTCTTGCTGTATGGCCGAGGTCACCGGACCTTGGACC
GTTTTAAGCTGGATGATGTGACTGACGAATACTTGATGTCCATGTATGGATTCCCCCGACAATTCATATA
CTTCTTAGTGGAACTCTTGGGGGCAAGCCTTTCTCGGCCTACTCAGAGATCTAGGGCTATTAGCCCTGAG
ACACAGATCCTGGCAGCATTAGGGTTTTATACCTCAGGGTCCTTCCAGACTCGGATGGGAGATGCAATTG
GAATTAGCCAGGCCTCTATGAGTCGCTGCGTTGCAAATGTCACTGAAGCCCTTGTGGAACGGGCCTCACA
GTTTATTCACTTTCCAGTTGATGAAGCTGCCGTACAGTCTCTAAAGGACGAATTCTATGGATTGGCAGGG
ATGCCAGGGGTGATAGGGGTGGCTGACTGTATCCATGTAGCAATCAAGGCACCAAATGCGGAAGACCTCT
CTTACGTGAACCGAAAGGGTCTGCATTCTCTAAACTGCCTGGTGGTGTGTGACATCAGAGGGGCACTGAT
GACTGTGGAGACAAGCTGGCCAGGTAGCCTCCAGGACTGTGCTGTGCTACAGCGGTCTTCTTTAACCAGT
CAGTTTGAAACTGGGATGCCCAAAGATAGCTGGCTTCTTGGTGACAGTTCCTTCTTTCTCCGATCCTGGC
TCTTGACACCACTACCCATTCCTGAAACTGCAGCGGAGTATCGCTACAATAGGGCTCATTCTGCAACTCA
CAGTGTGATTGAGAGGACGTTGCAGACCCTCTGCTGTAGGTTCCGGTGCCTGGACGGATCCAAAGGGGCA
CTGCAGTACTCACCGGAGAAATGCAGCCACATCATCTTAGCTTGCTGTGTCCTTCACAACATTTCCCTGG
ACCATGGCATGGATGTTTGGTCCTCTCCAGTGCCTGGACCCATTGACCAGCCCCCTGAGGGGGAGGATGA
GCACATGGAGTCTCTGGACTTAGAGGCTGACAGGATCCGGCAGGAGCTGATACTCACTCATTTCAGTTAG

Translation (349 aa):
MAIPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYFLVELLGASLSRPTQRSRAISPE
TQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPVDEAAVQSLKDEFYGLAG
MPGVIGVADCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTS
QFETGMPKDSWLLGDSSFFLRSWLLTPLPIPETAAEYRYNRAHSATHSVIERTLQTLCCRFRCLDGSKGA
LQYSPEKCSHIILACCVLHNISLDHGMDVWSSPVPGPIDQPPEGEDEHMESLDLEADRIRQELILTHFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH