NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50588.1 Public Mus musculus 2 Pkp4 23 108 98 CCDS HistoryNCBI Gene:227937Re-query CCDS DB by CCDS ID:50588.1Re-query CCDS DB by GeneID:227937See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168631.7 ENSMUSP00000129836.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168631.7Link to Ensembl Protein Viewer:ENSMUSP00000129836.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168631Re-query CCDS DB by Protein ID:ENSMUSP00000129836
Original member Current member NCBI NM_175464.2 NP_780673.2 Accepted alive Link to Nucleotide Sequence:NM_175464.2Link to Protein Sequence:NP_780673.2Re-query CCDS DB by Nucleotide ID:NM_175464Re-query CCDS DB by Protein ID:NP_780673Link to BLAST:NP_780673.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780673.2 1147 Q68FH0-2 1147 100% 0 0

Chromosomal Locations for CCDS 50588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 59214683 59214814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59266388 59266500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59289218 59289252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59305066 59305197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59305305 59305492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59308008 59308557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59310102 59310290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59311694 59311913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59318512 59318644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59322502 59322715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59334748 59334931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59337584 59337701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59338719 59338910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59339081 59339254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59342093 59342243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59344798 59344993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59347720 59347804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59347924 59348041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59352262 59352335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59354203 59354448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3444 nt):
ATGCCCGCCCCTGAACAGGGCTCACTGGTGGAGGAGGGGCAACCACAGACCCACCAGGAAGCTGTCTCCA
CTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCTTCCGTGAAGGAGCAGGAGCTTCA
GTTTCAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGG
CTTGGAGCAGAATCGCCAAGCATCGCCAGCACCAGCTCAACTGAAAAGTCATTTCCTTGGAGATCAACAG
ATGTGCCAAATCCTGGTGTGAGCAAACCTAGAGTTTCTGACACTATTCATCCCAACAACTATCTCATCAG
GACAGAGCCAGAACAGGGGACCCTCTACTCACCAGAACAGACTTCTCTCCATGAAAGTGAGGGATCGTTG
GGAAACTCAAGAAGTTCAACACAGATGAATTCTTACTCTGACAGTGGGTACCAGGAAGCAGGGAGTTTCC
ACAACAGCCAAACCGTGAACAAGGCAGACAGCAGACAGCATCCATTCACAGGATCAACAAGTAACCATGT
GGTGAGGACTTCAAGAGCTGAAGGACAAACACTGGTTCAGCCATCAGTAGCCAATCGGGCCATGCGGAGA
GTTAGTTCAGTTCCATCTAGAGCACAGTCTCCTTCTTATGTTACCAGCACAGGCGTGTCTCCTTCAAGGG
GGTCACTGAGAACTTCTCTGGGTAGTGGATTTGGCTCTCCATCAGTGACGGACTCCCGACCTCTGAACCC
CAGTGCTTACTCCTCCAGCACGCTCCCTGCACAGCGGGCCGCCTCTCCATACTCACAGAGACCCGCCTCC
CCAACAGCCGTGCGCCGGGTCGGGTCTGTCACCTCCCGGCAGACCTCCAATCCCAACGGACCAGTCCCTC
AGTACCAGACCACCACCAGGGTGGGGTCCCCACTGACCCTGACTGATGCCCAGACTCGAGTAGCTTCCCC
ATCCCAAGGCCAGGTGGGGTCATCGTCCCCGAAACGCTCTGGGATGACCGCCGTACCACAGCACCTGGGA
CCTTCACTGCAAAGGACTGTTCATGACATGGACCAATTTGGACAGCAGCAGTATGACATTTATGAAAGGA
TGGTTCCACCTCGGCCAGACAGCCTGACAGGCTTACGGAGTTCCTATGCCAGTCAGCATAGTCAGCTTGG
GCAAGAGCTCCGTTCAGCTGTGTCTCCTGACTTGCACATCACTCCTATCTATGAAGGGAGGACCTACTAC
AGTCCAGTGTACCGCAGCCCAAACCACGGGACCGTGGAGCTCCAGGGGTCACAGACAGCATTGTATCGCA
CAGGCTCAGTAGGTATTGGAAATCTACAAAGGACATCCAGCCAGCGAAGCACCCTTACATACCAAAGAAA
TAACTATGCCCTGAACACAGCAGCTACCTATGCGGAGCCCTACAGGCCAGTTCAGTACCGAGTCCAAGAG
TGCAGCTATAACAGGCTGCAGCACACAGGGCCAGCTGATGACGGTGCCACAAGATCCCCATCAATAGACA
GCATTCAGAAGGACCCCAGGGAGTTTGCCTGGCGTGACCCTGAGCTGCCAGAAGTCATTCACATGCTGCA
GCACCAGTTCCCATCGGTCCAGGCAAATGCCGCAGCCTACCTGCAGCATCTGTGCTTTGGTGACAACAAA
GTGAAGATGGAGGTGTACAGGCTAGGGGGAATCAAGCATCTGGTCGACCTGTTGGACCACAGGGTGTTGG
AAGTTCAGAAGAATGCTTGTGGCGCCCTTCGAAACCTTGTGTTTGGCAAGTCAACAGACGAAAATAAAAT
AGCAATGAAGAACGTTGGTGGAATCCCTGCCTTGCTGCGACTGTTAAGAAAATCCATTGATGCAGAAGTA
AGGGAGCTTGTTACAGGGGTTCTTTGGAATCTATCTTCGTGTGATGCTGTAAAGATGACAATCATTCGAG
ACGCGCTCTCAACCTTAACCAACACTGTGATAGTTCCACATTCTGGTTGGAATAACTCTTCCTTTGATGA
TGATCATAAAATTAAATTTCAGACCTCACTGGTTCTTCGGAACACAACAGGTTGCCTGAGGAACCTCAGC
TCTGCCGGGGAGGAAGCACGAAAACAAATGCGCTCCTGCGAGGGGCTGGTGGACTCGCTGTTGTATGTGA
TCCACACGTGTGTGAACACTTCTGACTACGACAGCAAGACAGTGGAGAACTGTGTGTGTACCCTGAGGAA
CCTGTCATACCGGCTGGAGCTGGAAGTCCCTCAGGCCCGGCTGCTCGGACTGAACGAGCTAGATGACTTA
CTAGGAAAAGAGTCTCCCAGCAAAGACTCGGAACCAAGCTGCTGGGGAAAGAAGAAGAAAAAGAAAAAGA
GAACGCCACAAGAGGACCAATGGGATGGAGTCGGGCCTATCCCTGGACTGTCCAAGTCCCCCAAGGGAGT
CGAGATGCTGTGGCATCCATCAGTGGTAAAGCCGTACCTGACTCTGTTAGCAGAAAGTTCCAACCCTGCC
ACCTTGGAAGGCTCTGCCGGATCCCTGCAGAACCTCTCTGCTGGCAACTGGAAGTTTGCAGCATACATCC
GGGCAGCTGTCCGGAAGGAAAAAGGGCTTCCTATCCTTGTCGAGCTTCTAAGGATGGATAATGACAGAGT
TGTCTCTTCTGTGGCCACTGCCTTGAGGAACATGGCGCTGGACGTTCGCAACAAGGAGCTCATAGGTAAA
TACGCCATGCGAGACCTGGTGAACAGGCTTCCAGGTGGCAACGGCCCCAGCATCCTGTCCGATGAAACCG
TGGCAGCCATCTGCTGTGCTCTGCACGAGGTCACCAGCAAAAACATGGAGAATGCCAAAGCTCTGGCCGA
CTCGGGAGGTATAGAGAAGCTGGTGAACATAACCAAAGGCAGAGGAGACAGATCCTCTCTGAAAGTGGTG
AAGGCGGCAGCCCAGGTCTTGAATACATTATGGCAGTACCGGGACCTCCGGAGCATTTACAAAAAGGATG
GGTGGAATCAGAACCATTTTATTACACCTGTGTCCACGCTAGAGCGAGACCGATTCAAATCACACCCTTC
TCTGTCCACCACCAACCAACAGATGTCGCCCATCATTCAGTCAGGCTCCAGCAAACCTTCACCAATATAC
ATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAATAGACGGCTACAGCATCAGCAGCTGTACTATCAAG
ATGACTCCACCAGGAAGACCTTGGATGCATACAGACTGTACCTGCAGTCTCCTCGAAGCTATGAAGACCC
TTATTGTGATGACCGAGTTCACTTCCCAGCTTCTACTGATTACTCAACGCAGTACGGACTGAAATCAACC
ACGAATTATGTAGACTTTTATTCCACTAAACGACCTTCTTATAGAGCCGAACAGTACCCTGGGTCCCCGG
ACTCCTGGGTGTAG

Translation (1147 aa):
MPAPEQGSLVEEGQPQTHQEAVSTGPGMEPETTATTILASVKEQELQFQRLTRELEVERQIVASQLERCR
LGAESPSIASTSSTEKSFPWRSTDVPNPGVSKPRVSDTIHPNNYLIRTEPEQGTLYSPEQTSLHESEGSL
GNSRSSTQMNSYSDSGYQEAGSFHNSQTVNKADSRQHPFTGSTSNHVVRTSRAEGQTLVQPSVANRAMRR
VSSVPSRAQSPSYVTSTGVSPSRGSLRTSLGSGFGSPSVTDSRPLNPSAYSSSTLPAQRAASPYSQRPAS
PTAVRRVGSVTSRQTSNPNGPVPQYQTTTRVGSPLTLTDAQTRVASPSQGQVGSSSPKRSGMTAVPQHLG
PSLQRTVHDMDQFGQQQYDIYERMVPPRPDSLTGLRSSYASQHSQLGQELRSAVSPDLHITPIYEGRTYY
SPVYRSPNHGTVELQGSQTALYRTGSVGIGNLQRTSSQRSTLTYQRNNYALNTAATYAEPYRPVQYRVQE
CSYNRLQHTGPADDGATRSPSIDSIQKDPREFAWRDPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNK
VKMEVYRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPALLRLLRKSIDAEV
RELVTGVLWNLSSCDAVKMTIIRDALSTLTNTVIVPHSGWNNSSFDDDHKIKFQTSLVLRNTTGCLRNLS
SAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYDSKTVENCVCTLRNLSYRLELEVPQARLLGLNELDDL
LGKESPSKDSEPSCWGKKKKKKKRTPQEDQWDGVGPIPGLSKSPKGVEMLWHPSVVKPYLTLLAESSNPA
TLEGSAGSLQNLSAGNWKFAAYIRAAVRKEKGLPILVELLRMDNDRVVSSVATALRNMALDVRNKELIGK
YAMRDLVNRLPGGNGPSILSDETVAAICCALHEVTSKNMENAKALADSGGIEKLVNITKGRGDRSSLKVV
KAAAQVLNTLWQYRDLRSIYKKDGWNQNHFITPVSTLERDRFKSHPSLSTTNQQMSPIIQSGSSKPSPIY
ISSYSSPAREQNRRLQHQQLYYQDDSTRKTLDAYRLYLQSPRSYEDPYCDDRVHFPASTDYSTQYGLKST
TNYVDFYSTKRPSYRAEQYPGSPDSWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH