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Report for CCDS50537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50537.1 Public Mus musculus 2 Kcnt1 23 108 98 CCDS HistoryNCBI Gene:227632Re-query CCDS DB by CCDS ID:50537.1Re-query CCDS DB by GeneID:227632See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171268.7 ENSMUSP00000132212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171268.7Link to Ensembl Protein Viewer:ENSMUSP00000132212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171268Re-query CCDS DB by Protein ID:ENSMUSP00000132212
Original member NCBI NM_001145403.2 NP_001138875.1 Updated not alive Link to Nucleotide Sequence:NM_001145403.2Link to Protein Sequence:NP_001138875.1Re-query CCDS DB by Nucleotide ID:NM_001145403Re-query CCDS DB by Protein ID:NP_001138875
Current member NCBI NM_001145403.3 NP_001138875.1 Accepted alive Link to Nucleotide Sequence:NM_001145403.3Link to Protein Sequence:NP_001138875.1Re-query CCDS DB by Nucleotide ID:NM_001145403Re-query CCDS DB by Protein ID:NP_001138875Link to BLAST:NP_001138875.1

Chromosomal Locations for CCDS 50537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25863968 25864062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25882196 25882237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25888069 25888148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25888759 25888858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25890849 25890905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25891191 25891239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25892058 25892117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25892334 25892408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25892474 25892557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25893129 25893223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25894282 25894462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25898271 25898435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25898699 25898835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25900223 25900286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25900372 25900480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25900889 25900997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25901209 25901358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25901752 25901990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25903359 25903593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25905273 25905378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25906663 25906835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25907275 25907346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25907516 25907650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25908045 25908156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25909205 25909306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25909594 25909677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25909814 25909936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25910266 25910286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25911026 25911356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25912655 25912717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25915779 25915866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25915997 25916117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3657 nt):
ATGAACGACCTGGACACGGAGGTGCTGCCCTTGCCGCCAAGGTACCGATTCCGTGACCTGCTTTTAGGAG
ACCAGCCATTCCCGAACGACGATAGGCTTCATGTGGAAGATTTCAGCCTGGACTCTTCCCTTTCTCAGGT
CCAGGTGGAGTTCTATGTCAATGAGAACACCTTCAAAGAGCGGCTCAAGCTGTTCTTCATCAAAAACCAA
AGATCCAGCCTGAGGATCCGGCTGTTCAACTTCTCCCTCAAGCTCCTCACCTGCCTGCTGTATATCGTCC
GTGTCCTGCTTGACAACCCAGACCAGGGCATCGGATGCTGGGGCTGCACGAAGTATAACTACACTTTCAA
TGGCTCATCCTCTGAGTTCCACTGGGCTCCCATCCTGTGGGTGGAGAGGAAAATGGCTCTGTGGGTGATC
CAGGTCATTGTGGCCACAATAAGCTTCTTAGAGACCATGCTCATCATTTACCTCAGCTACAAAGGCAACA
TCTGGGAGCAGATATTCCATGTGTCTTTCGTCTTGGAGATGATCAACACACTGCCCTTCATCATCACGGT
CTTCTGGCCACCTCTGCGGAACCTGTTCATCCCCGTGTTTCTCAACTGCTGGCTGGCCAAGCATGCGCTG
GAGAACATGATTAATGACTTCCACCGTGCCATCCTACGCACACAGTCAGCCATGTTCAACCAGGTGCTCA
TCCTGTTCTGCACCCTGCTGTGCCTGGTCTTCACAGGGACCTGTGGGATCCAGCACCTGGAGCGAGCAGG
TGGCAACTTGAACCTGCTGACCTCCTTCTACTTCTGCATCGTGACTTTCTCAACTGTGGGCTTCGGTGAT
GTGACGCCCAAGATCTGGCCATCCCAGCTCCTGGTGGTCATCCTGATCTGTGTCACCCTTGTGGTGCTCC
CACTGCAATTTGAAGAGCTTGTCTACCTCTGGATGGAGCGTCAGAAGTCAGGGGGCAACTATAGCCGCCA
CCGAGCACGGACGGAGAAGCACGTAGTCCTGTGTGTGAGCTCCCTCAAGATTGATCTCCTCATGGACTTC
CTGAATGAGTTCTATGCCCATCCCCGGCTCCAGGACTACTACGTGGTCATCCTGTGTCCCTCTGAAATGG
ACGTCCAGGTGCGCAGGGTGCTGCAGATTCCCCTGTGGTCCCAGCGGGTCATCTACCTCCAGGGCTCTGC
CCTCAAGGACCAGGATCTCATGCGAGCCAAGATGGACAACGGAGAGGCCTGCTTTATCCTCAGCAGCAGG
AATGAGGTGGACCGCACAGCTGCGGATCACCAGACCATCCTTCGAGCCTGGGCTGTGAAGGACTTTGCCC
CCAACTGTCCCCTCTATGTCCAGATCCTCAAGCCCGAAAACAAGTTTCACGTCAAATTTGCTGACCACGT
GGTATGCGAGGAAGAGTGCAAGTACGCCATGCTGGCCCTGAACTGCATCTGCCCGGCCACCTCCACCCTC
ATCACCCTGCTGGTGCACACGTCCCGTGGCCAGGAAGGACAGGAGTCTCCCGAGCAGTGGCAGCGCACGT
ACGGGAGGTGCTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGA
GGGCAAGAGCTTCACCTACGCAGCCTTCCACGCGCACAAGAAATATGGGGTGTGCCTCATCGGGCTGAAG
CGTGAGGAGAACAAGAGTATCCTGCTGAACCCAGGACCACGGCACATCCTGGCTGCCTCCGACACCTGCT
TCTATATCAATATTACCAAGGAGGAGAACTCAGCTTTCATCTTCAAACAGGAGGAGAAGCAGAAGAGACG
GGGCCTTGCAGGGCAGGCACTATATGAAGGGCCCTCCCGGCTCCCAGTGCATAGCATCATCGCCTCTATG
GGGACAGTGGCCATGGACCTGCAGAACACAGATTGCCGGCCCTCCCAGGGTGGCAGTGGCGGGGACGGCA
CAAAGCTGACTCTGCCCACCGAGAACGGCTCTGGTAGTCGACGCCCCAGCATCGCACCCGTTCTGGAGTT
GGCAGACAGCTCAGCCCTGTTGCCCTGCGACCTGCTGAGTGACCAGTCAGAGGATGAGGTGACACCCTCG
GACGACGAGGGGCTCTCTGTGGTTGAGTACGTGAAGGGCTATCCCCCCAACTCACCCTACATTGGCAGCT
CCCCGACTTTATGCCACCTCCTGCCTGTGAAAGCCCCCTTCTGCTGCCTGCGGTTGGACAAGGGCTGCAA
ACACAACAGCTACGAGGATGCCAAGGCCTATGGGTTCAAGAACAAGCTGATTATTGTCTCTGCTGAGACG
GCAGGCAACGGGCTCTACAACTTCATCGTGCCTCTGCGCGCCTACTACCGGTCCCGCCGGGAGCTCAACC
CTATCGTGTTGCTGCTTGACAACAAGCCTGACCACCACTTCCTGGAGGCCATCTGTTGCTTCCCCATGGT
CTACTACATGGAGGGATCCGTGGACAACCTGGACAGCTTACTGCAGTGTGGCATCATCTATGCTGACAAC
CTGGTGGTGGTGGACAAGGAGAGCACTATGAGCGCTGAAGAGGACTACATGGCAGATGCCAAGACCATCG
TCAATGTGCAAACCATGTTCCGGCTTTTCCCCAGTCTCAGCATCACCACGGAGCTCACACACCCTTCCAA
CATGCGGTTCATGCAGTTCCGTGCCAAGGACAGCTACTCTCTGGCTCTTTCCAAACTTGAAAAGCAAGAA
CGGGAGAACGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGAGTATTTAGTATCA
GCATGTTGGATACACTGCTCTACCAGTCCTTCGTGAAGGACTACATGATCACCATCACCAGGCTGCTCTT
GGGCCTTGATACTACACCAGGCTCCGGCTACCTCTGTGCAATGAAGGTAACCGAGGACGACCTGTGGATC
CGCACTTACGGCCGCCTCTTCCAGAAACTCTGCTCCTCCAGCGCCGAGATCCCCATCGGCATCTACAGGA
CCGAGTGCCATGTCTTCTCGGAGCCCCATGACGTCAGAGCCCAGTCTCAGATCTCGGTGAACATGGAGGA
CTGCGAGGATACTCGGGAGGCCAAGGGACCCTGGGGCACACGAGCTGCATCTGGCAGTGGCAGCACCCAT
GGCCGTCACGGGGGCAGTGCTGACCCAGTGGAGCACCCACTACTACGTCGCAAGAGCCTGCAGTGGGCCC
GCAAGCTGAGTCGCAAGAGCACCAAGCAGGCAGGGAAGGCACCTGTGGCCACAGACTGGATCACCCAGCA
GCGGCTCAGCCTGTACCGACGCTCAGAGCGCCAGGAGCTCTCAGAGCTGGTCAAGAACCGAATGAAGCAC
CTGGGACTGCCCACCACTGGCTATGAGGACGTAGCAAATTTAACAGCCAGTGATGTGATGAATCGGGTAA
ACCTGGGATATTTGCAAGATGAGATGAACGATCATCACCAGAACACCCTTTCCTATGTACTCATCAACCC
CCCGCCAGACACAAGACTGGAACCCAACGACATTGTGTACCTCATCCGTTCCGACCCCCTGGCCCATGTG
GCCAGCAGCTCCCAGAGTCGGAAAAGCAGCTGCAGCAACAAGCTCTCATCCTGTAATCCTGAGACCAGGG
ATGAGACCCAGCTCTGA

Translation (1218 aa):
MNDLDTEVLPLPPRYRFRDLLLGDQPFPNDDRLHVEDFSLDSSLSQVQVEFYVNENTFKERLKLFFIKNQ
RSSLRIRLFNFSLKLLTCLLYIVRVLLDNPDQGIGCWGCTKYNYTFNGSSSEFHWAPILWVERKMALWVI
QVIVATISFLETMLIIYLSYKGNIWEQIFHVSFVLEMINTLPFIITVFWPPLRNLFIPVFLNCWLAKHAL
ENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGGNLNLLTSFYFCIVTFSTVGFGD
VTPKIWPSQLLVVILICVTLVVLPLQFEELVYLWMERQKSGGNYSRHRARTEKHVVLCVSSLKIDLLMDF
LNEFYAHPRLQDYYVVILCPSEMDVQVRRVLQIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSR
NEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHVKFADHVVCEEECKYAMLALNCICPATSTL
ITLLVHTSRGQEGQESPEQWQRTYGRCSGNEVYHIRMGDSKFFREYEGKSFTYAAFHAHKKYGVCLIGLK
REENKSILLNPGPRHILAASDTCFYINITKEENSAFIFKQEEKQKRRGLAGQALYEGPSRLPVHSIIASM
GTVAMDLQNTDCRPSQGGSGGDGTKLTLPTENGSGSRRPSIAPVLELADSSALLPCDLLSDQSEDEVTPS
DDEGLSVVEYVKGYPPNSPYIGSSPTLCHLLPVKAPFCCLRLDKGCKHNSYEDAKAYGFKNKLIIVSAET
AGNGLYNFIVPLRAYYRSRRELNPIVLLLDNKPDHHFLEAICCFPMVYYMEGSVDNLDSLLQCGIIYADN
LVVVDKESTMSAEEDYMADAKTIVNVQTMFRLFPSLSITTELTHPSNMRFMQFRAKDSYSLALSKLEKQE
RENGSNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTPGSGYLCAMKVTEDDLWI
RTYGRLFQKLCSSSAEIPIGIYRTECHVFSEPHDVRAQSQISVNMEDCEDTREAKGPWGTRAASGSGSTH
GRHGGSADPVEHPLLRRKSLQWARKLSRKSTKQAGKAPVATDWITQQRLSLYRRSERQELSELVKNRMKH
LGLPTTGYEDVANLTASDVMNRVNLGYLQDEMNDHHQNTLSYVLINPPPDTRLEPNDIVYLIRSDPLAHV
ASSSQSRKSSCSNKLSSCNPETRDETQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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