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Report for CCDS50501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50501.1 Public Mus musculus 2 Pfkfb3 23 108 98 CCDS HistoryNCBI Gene:170768Re-query CCDS DB by CCDS ID:50501.1Re-query CCDS DB by GeneID:170768See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171188.8 ENSMUSP00000129122.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171188.8Link to Ensembl Protein Viewer:ENSMUSP00000129122.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171188Re-query CCDS DB by Protein ID:ENSMUSP00000129122
Original member Current member EBI ENSMUST00000191668.5 ENSMUSP00000142079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191668.5Link to Ensembl Protein Viewer:ENSMUSP00000142079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191668Re-query CCDS DB by Protein ID:ENSMUSP00000142079
Original member Current member NCBI NM_001177753.1 NP_001171224.1 Accepted alive Link to Nucleotide Sequence:NM_001177753.1Link to Protein Sequence:NP_001171224.1Re-query CCDS DB by Nucleotide ID:NM_001177753Re-query CCDS DB by Protein ID:NP_001171224Link to BLAST:NP_001171224.1

Chromosomal Locations for CCDS 50501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11475764 11475806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11478036 11478058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11480198 11480371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11481247 11481333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11481871 11481935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11482054 11482116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11482445 11482574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11483929 11484033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11484205 11484351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11484655 11484862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11486219 11486343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11488726 11488782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11489671 11489745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11490290 11490356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11492560 11492656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11493903 11494028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11501625 11501700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGCCGTTGGAACTGACCCAGAGCCGGGTACAGAAGATCTGGGTGCCCGTCGATCACCGACCCTCGTTGC
CC
AGATCCTGTGGGCCGAAGCTGACCAACTCCCCAACCGTGATTGTGATGGTGGGGCTCCCAGCCCGGGG
T
AAGACTTACATCTCCAAGAAGCTGACTCGCTACCTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT
GTG
GGAGAGTATCGGCGTGAGGCTGTGAAGCAGTACAGCTCTTACAACTTCTTCCGCCCTGACAATGAGG
AA
GCCATGAGAGTCCGAAAACAGTGTGCCTTAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAAAGGA
A
GGTGGACAGATTGCAGTTTTTGATGCCACCAATACAACTAGAGAAAGAAGGCACATGATCCTTAATTTT
GCC
AAAGAAAATGACTTCAAGGCATTTTTCATCGAGTCGGTCTGTGACGACCCTACTGTTGTGGCCTCCA
AC
ATCATGGAAGTTAAAATCTCCAGCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCATGGACGACTT
C
ATGAAGAGAATCAATTGCTATGAAGCCAGCTACCAGCCTCTTGACCCTGATAAATGTGACAGGGACTTG
TCA
CTCATCAAAGTGATTGATGTTGGCCGGAGGTTCTTGGTGAACAGAGTGCAGGACCACATCCAGAGCC
GA
ATTGTATACTACCTGATGAACATCCACGTGCAGCCCCGTACCATCTACCTGTGTCGGCATGGCGAGAA
T
GAGTACAACTTGCAGGGCAAGATTGGGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCGCCAAT
GCC
CTGAGCAAGTTCGTAGAAGAACAGAATCTGAAGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA
CC
ATTCAGACCGCGGAGGCCCTGAGGCTCCCCTACGAGCAGTGGAAGGCACTCAACGAGATCGATGCTGG
T
GTGTGTGAGGAACTAACCTATGAGGAGATCAGAGATACCTACCCTGAGGAGTACGCACTGCGTGAACAG
GAC
AAGTACTACTATCGCTATCCCACGGGAGAGTCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTGA
TC
ATGGAATTAGAGCGCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTGTTCTACGCTGCCTACTAGC
C
TACTTCCTCGACAAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCGCTCCACACTGTCCTGAAACTG
ACA
CCTGTGGCATATGGGTGCCGGGTGGAGTCCATTTACTTGAATGTAGAATCGGTGAGCACACACCGGG
AG
AGGTCAGAGGCTGTCAAAATACAACACTTTGCCAGTGTAGTCAGACCTTCCTCTTACACCGAACTTGA
C
TTTCAGTCTGTGGAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGT
GTC
ACCCCACTAGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCGTGTGGCTT
CC
ACTTCTGCTGCCCTGCCAAGCTGCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACCTTTGCT
A
GGGAAAGCCTGTCTACGAAGTGTCTGTCACATTTTTTCAAAGTTTTCTCCTTACTAA


Translation (555 aa):
MPLELTQSRVQKIWVPVDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN
V
GEYRREAVKQYSSYNFFRPDNEEAMRVR
KQCALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMILNF
A
KENDFK
AFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQPLDPDKCDRDL
S
LIKVIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEYNLQGKIGGDSGLSSRGKK
FAN
A
LSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDA
GVCEELTYEEIRDTYPEEYALREQ
D
KYYYRYPTGE
SYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKL
T
PVAY
GCRVESIYLNVESVSTHRERSEAVKIQHFASVVRPSSYTELDFQSVESAKQDAKKGPNPLMRRNS
V
TPLASPEPTKKPRINSFEERVASTSAALPSCLPPEVPTQLPGQ
PLLGKACLRSVCHIFSKFSPY



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser