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Report for CCDS50486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50486.1 Public Mus musculus 2 Dclre1c 23 108 98 CCDS HistoryNCBI Gene:227525Re-query CCDS DB by CCDS ID:50486.1Re-query CCDS DB by GeneID:227525See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50486.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100463.9 ENSMUSP00000098031.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100463.9Link to Ensembl Protein Viewer:ENSMUSP00000098031.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100463Re-query CCDS DB by Protein ID:ENSMUSP00000098031
Original member Current member NCBI NM_001110214.1 NP_001103684.1 Accepted alive Link to Nucleotide Sequence:NM_001110214.1Link to Protein Sequence:NP_001103684.1Re-query CCDS DB by Nucleotide ID:NM_001110214Re-query CCDS DB by Protein ID:NP_001103684Link to BLAST:NP_001103684.1

Chromosomal Locations for CCDS 50486.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3424218 3424326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3425364 3425415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3429268 3429352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3433747 3433806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3436438 3436493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3436989 3437090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3437676 3437748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3437952 3438092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3440758 3440859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3443654 3443790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3444201 3444255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3447074 3447162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3450279 3450373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3457544 3457584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3458691 3458954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGAGCTCCTTCCAGGGACAGATGGCGGAGTATCCAACCATCTCCATTGACCGCTTCGACAGGGAGAACC
TGAAAGCCCGTGCCTACTTCCTTTCGCACTGTCACAAGGATCACATGAAAGGATTAAGGGCTCCTTCCTT
GAAAAGAAGGCTGGAATGCAGCTTGAAGGTCTTCCTGTACTGTTCTCCAGTCACTAAGGAGCTGTTGTTA
ACTAGCCCAAAGTACAGATTCTGGGAAAACAGAATTATAACAATTGAAATTGAAACTCCTACGCAGATAT
CTTTAGTTGATGAGGCTTCGGGTGAGAAGGAAGAGGTTGTTGTGACTCTCTTACCAGCTGGTCACTGCCC
AGGATCAGTTATGTTTTTATTTCAGGGCAGTAATGGAACTGTCTTATACACAGGAGACTTCAGACTGGCA
AAAGGAGAAGCTTCCAGAATGGAGCTTCTGCACTCTGGAGGCAGAGTAAAAGACATCCAAAGTGTGTATT
TAGACACGACTTTCTGTGACCCAAGGTTTTATCAGATCCCAAGTCGTGAGCAGTGTTTGAGGGGCATTTT
GGAGCTGGTTCGGAGCTGGGTCACTAGGAGTCCGCACCACGTCGTGTGGCTGAACTGTAAAGCAGCTTAT
GGCTACGAGTATTTATTCACCAACCTAAGCGAGGAGCTGGGAGTTCAGGTTCATGTGGACAAGCTGGACA
TGTTTAAAAACATGCCTGATATCCTGCACCATCTCACAACGGACAGAAACACCCAGATCCACGCCTGCCG
CCACCCAAAGGCAGAAGAGTGTTTTCAGTGGAATAAACTACCCTGTGGTATAACTTCCCAAAACAAAACT
GCACTCCACACAATCAGCATCAAGCCATCTACCATGTGGTTTGGAGAGAGGACCAGAAAAACCAACGTGA
TCGTTAGGACTGGAGAGAGCTCATACAGAGCTTGCTTCTCTTTTCACTCCTCCTTCAGTGAGATTAAAGA
TTTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCAAATGTCATCCCAGTTGGCCTCACTGTGGATAAG
GTCATGGACGTTTTAAAGCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTTGGAA
AATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGTGGACACCATGATTAGAACTCCCAGACCCAGAAA
GATGAAAGGCTGTGGTCAATGGAGTCTGAAGATGCTTCTCCAGAACCTGGAAATACAGGAAGAGAAACAT
ATATTTGAGAACAGGGGCTGGAAGATGGCTGGGCAGGTAAAGGGTAGCTGTGGTCTTTTGGAGGGCCAGA
GTTCACTCCCAACATTCAAGCTAGCCACCTCCCTAGCCTCAAACTCCAGCTTCTGGCCTCCATGGCACCT
GCATTCACATGCGCACACACAAATCTTTACCTTTAAAAAAAAAACCAAAACTTTACTTTAG

Translation (486 aa):
MSSFQGQMAEYPTISIDRFDRENLKARAYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKELLL
TSPKYRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYTGDFRLA
KGEASRMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREQCLRGILELVRSWVTRSPHHVVWLNCKAAY
GYEYLFTNLSEELGVQVHVDKLDMFKNMPDILHHLTTDRNTQIHACRHPKAEECFQWNKLPCGITSQNKT
ALHTISIKPSTMWFGERTRKTNVIVRTGESSYRACFSFHSSFSEIKDFLSYICPVNVYPNVIPVGLTVDK
VMDVLKPLCRSPQSVEPKYKPLGKLKRARTIHLDSVDTMIRTPRPRKMKGCGQWSLKMLLQNLEIQEEKH
IFENRGWKMAGQVKGSCGLLEGQSSLPTFKLATSLASNSSFWPPWHLHSHAHTQIFTFKKKTKTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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