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Report for CCDS50463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50463.1 Public Mus musculus 19 Neurl1a 23 108 98 CCDS HistoryNCBI Gene:18011Re-query CCDS DB by CCDS ID:50463.1Re-query CCDS DB by GeneID:18011See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111807.4 ENSMUSP00000107438.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111807.4Link to Ensembl Protein Viewer:ENSMUSP00000107438.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111807Re-query CCDS DB by Protein ID:ENSMUSP00000107438
Original member Current member NCBI NM_001163480.1 NP_001156952.1 Accepted alive Link to Nucleotide Sequence:NM_001163480.1Link to Protein Sequence:NP_001156952.1Re-query CCDS DB by Nucleotide ID:NM_001163480Re-query CCDS DB by Protein ID:NP_001156952Link to BLAST:NP_001156952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156952.1 557 Q923S6-2 557 100% 0 0

Chromosomal Locations for CCDS 50463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47229063 47229096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47239802 47240043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47240350 47240671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47253119 47253808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47256712 47256858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47257417 47257655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGGGGGACAGATCACAAGGAACACTATCCACGACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACC
GATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCT
CTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCC
AGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAGATCA
CCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCA
CCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTG
CCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACC
GGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGT
GGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAGACAGCGAGCTGGTGCTGCCCGACTGCCTGCGG
CCGCGCTCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGA
GCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCC
GCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCAC
GCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCG
ACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCG
CTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCC
GCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCG
GGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAA
CGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCAT
GGCGCCATCACGCAGGTCCGCATCCTCGGCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCT
GCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCAC
CTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAGGGACAGCCCCCAACTCACCTGTGAGCCTGCCCGAG
TCACCGGTGACCCCAGGTCTGGGCCAGTGGAGTGATGAATGCACCATTTGCTATGAACACGCAGTGGACA
CAGTCATCTACACGTGTGGCCACATGTGCCTGTGCTACTCCTGTGGCCTGCGCCTCAAGAAGGCCCTGCA
CGCCTGCTGCCCCATCTGCCGTCGCCCCATCAAGGACATCATCAAGACCTACCGCAGCTCCTAG

Translation (557 aa):
MGGQITRNTIHDSIGGSFPVPSHRCHHKQKHCPPTLSGGGLPATPLLFHPHTKGSQILMDLSHKAVKRQA
SFCNAITFSNRPVLIYEQVRLKITKKQCCWSGALRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKAL
PEEFANEGNIIAFWVDKKGRVFYRINESAAMLFFSGVRTVDPLWALVDVYGLTRGVQLLDSELVLPDCLR
PRSFTALRRPSLRCEADEARLSVSLCDLNVPGADGDDGAPPAGCPIPQNSLNSQHSRALPAQLDGDLRFH
ALRAGAHVRILDEQTVARLEHGRDERALVFTSRPVRVAETIFIKVTRSGGGRAGALSFGVTTCDPGTLRP
ADLPFSPEALVDRKEFWAVCRVPGPLHSGDILGLVVNADGELHLSHNGAAAGMQLCVDASQPLWMLFSLH
GAITQVRILGSTIMTERGGPSLPCSPASTPTSPSALGIRLSDPLLSTCGSGPLGGSAGGTAPNSPVSLPE
SPVTPGLGQWSDECTICYEHAVDTVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTYRSS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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