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Report for CCDS50435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50435.1 Public Mus musculus 19 Arhgap19 23 108 98 CCDS HistoryNCBI Gene:71085Re-query CCDS DB by CCDS ID:50435.1Re-query CCDS DB by GeneID:71085See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163265.8 ENSMUSP00000129586.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163265.8Link to Ensembl Protein Viewer:ENSMUSP00000129586.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163265Re-query CCDS DB by Protein ID:ENSMUSP00000129586
Original member Current member NCBI NM_001163495.1 NP_001156967.1 Accepted alive Link to Nucleotide Sequence:NM_001163495.1Link to Protein Sequence:NP_001156967.1Re-query CCDS DB by Nucleotide ID:NM_001163495Re-query CCDS DB by Protein ID:NP_001156967Link to BLAST:NP_001156967.1

Chromosomal Locations for CCDS 50435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41770152 41770196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41774066 41774176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41779110 41779208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41781158 41781349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41782331 41782396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41784326 41784412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41784772 41784998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41786558 41786767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41788306 41788386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41791747 41792012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41801972 41802027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCGGCTGAGGCGCCGAGTGGAGGGGAGGCGCCGGTCTGCGACTCTGGCCGGAGTGATGCCATCTGCA
ATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGA
GAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGAT
TTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAG
CAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAGAAAAAGGAGTGGTATTTGGATCTCCGTT
GACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAAACTTGCGAGTGGAGGGC
TTGTTTAGAGTACCAGGCAACAGTGTTCGACAGCAGCTTTTGAGGGATGCTCTCAATAACGGGACTGATA
TTGACTTGGATTCAGGAGAGTTTCACTCAAATGATGTGGCCACGCTGCTGAAGATGTTTCTAGGAGAGTT
ACCCGAGCCCCTGCTGACCCATAAACATTTTCATGTACACCTCAAAATTGCTGATCTGATGCAGTTTGAT
GATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCA
TCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCA
AGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT
GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACT
CTCAGAAACTTTTTAAGGCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAAC
TCAAATGTCAAAGGATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGT
CAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGA
GAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAGTTCCA
TAAGCAGTCTCTGACTCAAACACCAGGGAGAGAACCTTCTACTCCCAGGGTCCAGAAGAGAGCCCGCTCA
CGCTCCTTCAGTGGGCTTATCAAGCGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTT
CTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTGGATTC
TTTTGAAGGCTCTCTTTATTACTTCTGTCCTCTACAGTGA

Translation (479 aa):
MAAEAPSGGEAPVCDSGRSDAICNFVICNDSPLRGQPIIFNPDFFVEKLRHEKPEVFTELVVSNITRLID
LPGTELAQLMGEVDLKLPGGAGPAAGFFRSLMSLKRKEKGVVFGSPLTEEGIAQIYQLIEYLHKNLRVEG
LFRVPGNSVRQQLLRDALNNGTDIDLDSGEFHSNDVATLLKMFLGELPEPLLTHKHFHVHLKIADLMQFD
DKGNKTNIPDKERQIEALQLLFLILPPANRNLLKLLLDLLYQTAKKQDKNKMSAHNLALMFAPHVLWPKN
VTANDLQENIIKLNTGMAFMIKHSQKLFKAPAYIRECARLYYLGSRTQMSKDDLDLTTSCHNMSFQLARC
QRQNRVDPSSQQEETQQHTEEALRELFQHVHNWPDSAKKKQLLRQFHKQSLTQTPGREPSTPRVQKRARS
RSFSGLIKRKVLGSQMTSEKKNSSPAPESVAMGELKKASKENMNLDSFEGSLYYFCPLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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