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Report for CCDS50408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50408.1 Public Mus musculus 19 Entrep1 23 108 98 CCDS HistoryNCBI Gene:381217Re-query CCDS DB by CCDS ID:50408.1Re-query CCDS DB by GeneID:381217See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096164.5 ENSMUSP00000093878.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096164.5Link to Ensembl Protein Viewer:ENSMUSP00000093878.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096164Re-query CCDS DB by Protein ID:ENSMUSP00000093878
Original member Current member NCBI NM_001114174.1 NP_001107646.1 Accepted alive Link to Nucleotide Sequence:NM_001114174.1Link to Protein Sequence:NP_001107646.1Re-query CCDS DB by Nucleotide ID:NM_001114174Re-query CCDS DB by Protein ID:NP_001107646Link to BLAST:NP_001107646.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107646.1 596 Q4FZH1-2 596 100% 0 0

Chromosomal Locations for CCDS 50408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 23973425 23973631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23975361 23975653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23977962 23978114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23979390 23979468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23979586 23979715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23984709 23984842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23986409 23986516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23988447 23988575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23994781 23994891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24021606 24021662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24030548 24030937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGTCTCTGCCGGTGGTGCTCCCGGGCTCCTGCTGCCCGGTGGCGGGGCTGTCGGGCGGACCTCAGGCCG
GGGGTCCTGGCGCCGCCACCGCCGCCGCCGCTCAGGAGCCGCCGCTGCCCCCGCTGCGGCCGCGCTGGCC
CCGGGGTGCTCTGCAGCCTCCAGCCCGGCCCCGCTGCGCCCCCGCCGCCGTGCTGGCCCCGCCGCCGGCG
CTCGCGTCCCGCCGCCCCGCCGCGCCAGGCTCCGCGCTGCTGCCCGCGCGCCCGCTGCTGTCGCTCGGGC
TCCTGCAGCTGATCCTGGGCTGCTGCATGGTGGCGCTCAGCTTCGGGGCGCTGTCGCTGAGCAGCTCGCC
GCAGGTGAAGAACTCGTGCCCATTCTGGGCTGGCTCCTCGGTGATACTCTCTGGAATCATTGGATTGACG
ACTTGGAAAAGGCCCATGATACTGCTGGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAA
ATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTGGT
GGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAA
AATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGAAAGTCCTGTTTG
CCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGAT
CTTTGCCAGCAGAAGGCCATGTATTGATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGG
ATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCA
CACCTCGGATGAACCGCAGGATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCAT
CAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGAC
CAGGAGCAGGAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTT
GCACGCAGATAACTCAAGGTGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCC
TATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGC
GACCCTGTGCTTCACCATTCGGAGGAGAGAGCTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAG
AAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACC
CCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCC
TCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGG
GGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAGATAATGGCCCCGTCACAGCCCAGCAC
ATCCCAGGCCCAGGAGTTGAGCTGGAGGAGACAGCCCGGCCTGCTGCACCTGCGCAGCTGTGGAGATCTA
AGCACCTTCTCTCTGACAGCAAGGCCGAGAGCCGAGAGGAGGCCCCAGCAGCGAGCGGAGGCTGAGCGGC
CACACAGCCTTATTGGTGTCATTCGAGAGACTGTCCTGTGA

Translation (596 aa):
MSLPVVLPGSCCPVAGLSGGPQAGGPGAATAAAAQEPPLPPLRPRWPRGALQPPARPRCAPAAVLAPPPA
LASRRPAAPGSALLPARPLLSLGLLQLILGCCMVALSFGALSLSSSPQVKNSCPFWAGSSVILSGIIGLT
TWKRPMILLVNLFVLLSVVCILLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAKCTDKE
NALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFASRRPCIDESQMSAEDVEEHGR
IPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGSDVIPLPHIYGARIKGVEVFCPLDPPPPYEAVVSQTD
QEQESSFQMPEGPETAASPAEPVCTQITQGGALTNTTGEENTSGSTPILTLVQPPRSRRALPLLRTRSKS
DPVLHHSEERATPVLSCEAATQTERRLDLATVTLRRGARPRASRCRPRSLIDYRSYIDTKLLVARFLEQS
SCSMTPDIHELVENIKSVLKSDEGHMEEAITSASFLEQIMAPSQPSTSQAQELSWRRQPGLLHLRSCGDL
STFSLTARPRAERRPQQRAEAERPHSLIGVIRETVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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