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Report for CCDS50390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50390.1 Public Mus musculus 19 Vwce 23 108 98 CCDS HistoryNCBI Gene:71768Re-query CCDS DB by CCDS ID:50390.1Re-query CCDS DB by GeneID:71768See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50390.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055115.8 ENSMUSP00000056958.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055115.8Link to Ensembl Protein Viewer:ENSMUSP00000056958.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055115Re-query CCDS DB by Protein ID:ENSMUSP00000056958
Original member Current member NCBI NM_027913.2 NP_082189.1 Accepted alive Link to Nucleotide Sequence:NM_027913.2Link to Protein Sequence:NP_082189.1Re-query CCDS DB by Nucleotide ID:NM_027913Re-query CCDS DB by Protein ID:NP_082189Link to BLAST:NP_082189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082189.1 929 Q3U515 929 100% 0 0

Chromosomal Locations for CCDS 50390.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10634474 10634583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10637144 10637238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10637317 10637406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10638052 10638180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10641626 10641742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10644147 10644263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10644994 10645122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10646534 10646952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10647032 10647125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10648426 10648508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10650561 10650648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10653050 10653135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10654234 10654351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10655352 10655437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10656610 10656706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10658000 10658082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10659421 10659511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10659588 10659670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10659980 10660043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10664091 10664701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGTGGGCTAGACTGTTGCTCCATGTCGCCTACATCTTGATCCCGTTGCTGGGGTCTTCAGCCCGAGGCT
ATACCGGGAGGAAGGCGCCAGGGCACTACTCTGCGGAGAGACGTCGTCTGGGGCCCCACGTCTGCCTCTC
TGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGCCCCTC
TGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAG
GGGCCACTTGCCCAGAAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGG
CTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGT
GCGGACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGT
GTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAGACACTGACGAGTGCCTGGG
AACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCAC
CTCCACGGCAACCGACACTCCTGTATAGATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTC
ACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGA
CCGTGTGTCCTGTGAAGCTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCAT
CCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTC
CAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCAC
ATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCC
TCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAG
GGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTC
TCAGTGCTTGTGCCAGGATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCA
GTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTGGCTGCTTTCACAGTGGCGCTATCCGAGCCG
AAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTGGCTGGAAATGTTTCTTG
TATCTCTCCCGAGTGTCCCCCTGGTCCCTGCAAGGCTTCCCCACAGTCAGATTGCTGTACTTGTGTTCCA
GGGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTA
CCACCTGTGTCTGCCAGAATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCG
AGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAGGCTGC
TCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTAT
GCGTCTGCCAGGCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCAT
CCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAGGCTGCACCTACACAGGTAGAATCTTCTACAAC
AACGAAACGTTCCCGTCAGTGCTCGACCCCTGTCTGAGCTGCATCTGCCTGCTGGGCTCAGTGGCCTGTT
CACCTGTGGACTGTCCCATCACCTGTACCTACCCCTTCCACCCGGATGGCGAGTGCTGCCCTGTATGCCA
CGACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACC
CGGTGCATCTGCCAGCTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCT
CCTGCCCAGATTCTGTGTTTCCTCTAGAAGAAAAGCAGCAACCATCCCCTCATGGAGAACTTGCCAAAGC
TGCACGGAACGCCCGTGGAGACACTGAAGTCCCTGTCAACTGTAGCTCCTGCCCGGGGCCTCCATCGGCA
TCACCTACAAGACCCATGGTCCACCTCCTGCAGAGGCTTTTAAGAACAAACCTGTCTAACATACAGTCTG
CATCCCCAAGCCCTCCCATAGCCCAGACCTCATCCTCACCCCTGTTGGAGCCAGAGGGCATATCTCTTGG
GAAGCCCAGAGCCTCCCAGCCCCCCGAGCCCTCAGCAGGGTCACCTGTCTCTCCTAGACTGTCCACTCTA
CCTCCAGCCATTCCAGGGACTCCTTTGTCACCTGTCACTCCAGAAAGCTCTTCTTCAACCTTTGGGACTC
AGACAGCATTCCAGTGGCTTCTGTCTGCCACCCCCTTAACTGAGGCAGAAACACCTTCAATGACCAATGC
TGACCTCTCAGAGACCCTCACCACTTCCTCGAGCTCTCAAAGGCTATCTGCAGCTCTCCCGGACACCCCC
AACCCTGTTCCCCAACAGTCCACAATTGACACCCCAAAGAAGGAGAACTCTACTATCTGA

Translation (929 aa):
MWARLLLHVAYILIPLLGSSARGYTGRKAPGHYSAERRRLGPHVCLSGFGSGCCPGWAPSMGSGHCTLPL
CSFGCGSGICIAPNVCSCQDGEQGATCPEAHGSCGEYGCDLTCNHGGCQEVARVCPVGFLMTETAVGIRC
ADIDECLSSSCEGHCVNTEGGFVCECGPGMQLSADRHSCQDTDECLGTPCQQRCKNSIGSYKCSCRAGFH
LHGNRHSCIDVNECRRPQERRVCHHTCHNTVGSFLCTCRPGFRLRSDRVSCEAFPKAVLAPSAILQPRQH
PAKMSLLLPEAGRPALSPGHSPPPGAPGYPTGVRTISQPSTTQVLPTFFPTQLISTPVPSSSPLGTLGPP
SLLQGAVGTPSSPRGPESPKLGAGSSSCWHLGATYESGSRWNQPGCSQCLCQDGEVTCGGVRCDATCSHP
VPPRDGGCCPSCTGCFHSGAIRAEGDVFSPPEENCTVCVCLAGNVSCISPECPPGPCKASPQSDCCTCVP
GRCYFHGRWYTDGAVFSGGGDDCTTCVCQNGEVECSFTPCPELECPREEWLLGPGQCCFTCREPTPTTGC
SLDDNGVEFPIGQIWSPGDPCELCVCQADGSVSCKRTDCVDSCPHPIRIPGQCCPDCSAGCTYTGRIFYN
NETFPSVLDPCLSCICLLGSVACSPVDCPITCTYPFHPDGECCPVCHDCNFEGRKVVNGQVFTLDDEPCT
RCICQLGEVSCETVPCRPICTDPSCPDSVFPLEEKQQPSPHGELAKAARNARGDTEVPVNCSSCPGPPSA
SPTRPMVHLLQRLLRTNLSNIQSASPSPPIAQTSSSPLLEPEGISLGKPRASQPPEPSAGSPVSPRLSTL
PPAIPGTPLSPVTPESSSSTFGTQTAFQWLLSATPLTEAETPSMTNADLSETLTTSSSSQRLSAALPDTP
NPVPQQSTIDTPKKENSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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