NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50366.1 Public Mus musculus 19 Men1 23 108 98 CCDS HistoryNCBI Gene:17283Re-query CCDS DB by CCDS ID:50366.1Re-query CCDS DB by GeneID:17283See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50366.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113502.9 ENSMUSP00000109130.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113502.9Link to Ensembl Protein Viewer:ENSMUSP00000109130.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113502Re-query CCDS DB by Protein ID:ENSMUSP00000109130
Original member Current member NCBI NM_001168488.1 NP_001161960.1 Accepted alive Link to Nucleotide Sequence:NM_001168488.1Link to Protein Sequence:NP_001161960.1Re-query CCDS DB by Nucleotide ID:NM_001168488Re-query CCDS DB by Protein ID:NP_001161960Link to BLAST:NP_001161960.1

Chromosomal Locations for CCDS 50366.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6335069 6335070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6335445 6335905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6336725 6336933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6337153 6337281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6337479 6337519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6337601 6337688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6338283 6338419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6338826 6338961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6339339 6339503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6339687 6340172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGCCACCGCCCGCCGCCATGGGGCTGAAGGCCGCCCAGAAGACGCTGTTCCCTCTGCGCTCTATCGACG
ACGTGGTGCGCCTGTTTGCTGCAGAGCTGGGCCGAGAGGAGCCTGACCTGGTGCTCCTGTCCTTGGTCCT
GGGCTTCGTGGAGCATTTCCTGGCTGTCAACCGTGTCATCCCCACCAACGTGCCGGAGCTCACCTTCCAG
CCCAGCCCCGCACCCGACCCTCCTGGTGGCCTCACCTACTTCCCGGTGGCCGACCTATCCATCATTGCTG
CCCTCTATGCCCGATTCACCGCTCAGATCCGCGGCGCTGTGGACCTCTCCCTCTATCCTCGAGAGGGAGG
TGTTTCTAGTCGCGAACTGGTAAAAAAGGTCTCGGATGTCATATGGAACAGCCTCAGCCGCTCCTACTTC
AAGGACCGGGCCCACATCCAGTCCCTCTTCAGCTTCATCACAGGCACCAAACTGGACAGCTCGGGCGTGG
CCTTTGCAGTGGTAGGGGCCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGAAGATCA
TGCTTGGGTGGTGTTTGGGCCCAACGGGGAGCAGACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGAG
GACCGCAGAGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGAAGGGGTCGTACA
TGCGCTGCGACCGTAAGATGGAGGTGGCGTTCATGGTGTGTGCCATCAACCCTTCCATCGATCTTCACAC
TGACTCTTTGGAACTGTTGCAACTACAGCAGAAGCTGCTCTGGCTGCTGTATGACCTCGGACATCTGGAA
AGATACCCCATGGCGCTAGGGAACTTGGCAGACCTGGAGGAGCTGGAGCCTACCCCGGGCCGGCCAGACC
CACTCACCCTTTATCACAAGGGAATTGCCTCAGCTAAGACCTACTACCAGGATGAACACATCTACCCCTA
CATGTACCTGGCTGGCTACCACTGTCGCAACCGAAATGTGCGCGAAGCCCTGCAGGCCTGGGCCGACACT
GCCACTGTTATCCAAGACTACAACTACTGCCGGGAGGATGAGGAGATCTACAAGGAATTCTTTGAAGTGG
CCAATGACGTCATCCCCAACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAGGCGAAGAGCGGACTGG
GGAGCAAGCCCAGGGCACCCAGGGCCAAGGTTCTGCTCTCCAGGACCCAGAATGCTTTGCCCACCTGCTG
CGATTTTATGATGGCATCTGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAA
CTTTCCTTGTGCAGTCCCTAGGCCGCTTCGAGGGACAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGA
AGCAGAGGCGGCCGAGGCTGAAGAACCATGGGGGGATGAAGCCCGAGAAGGCCGTCGGCGTGGTCCCCGA
AGAGAGTCCAAGCCTGAGGAGCCACCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCGGGCTCAGGAC
AAAGTGCAGGGTCGGGACCACCTAGGAAAACGTCAGGGACTGTCCCAGGTACTACCCGCGGTGGCCAGGA
AGTCGGCAATGCTGCTCAGGCTCCAGCACCTGCAGCATCGCCACCCCCAGAGGGCCCAGTGCTCACTTTC
CAGAGTGAGAAGATGAAAGGCATGAAGGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGC
TGCAACTCACGGCACAGTCGCAAGTGCAGATGAAGAAACAGAAAGTGTCCACACCCAGCGACTACACACT
CTCTTTCCTAAAGCGGCAGCGCAAGGGCCTCTGA

Translation (617 aa):
MPPPAAMGLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQ
PSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYF
KDRAHIQSLFSFITGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNE
DRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLE
RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYQDEHIYPYMYLAGYHCRNRNVREALQAWADT
ATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLETGEERTGEQAQGTQGQGSALQDPECFAHLL
RFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVHIVSREAEAAEAEEPWGDEAREGRRRGPR
RESKPEEPPPPKKPALDKGPGSGQSAGSGPPRKTSGTVPGTTRGGQEVGNAAQAPAPAASPPPEGPVLTF
QSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMKKQKVSTPSDYTLSFLKRQRKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH