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Report for CCDS50338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50338.1 Public Mus musculus 18 Zfp407 23 108 98 CCDS HistoryNCBI Gene:240476Re-query CCDS DB by CCDS ID:50338.1Re-query CCDS DB by GeneID:240476See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000125763.2 ENSMUSP00000118361.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125763.2Link to Ensembl Protein Viewer:ENSMUSP00000118361.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125763Re-query CCDS DB by Protein ID:ENSMUSP00000118361
Original member Current member NCBI NM_001033341.2 NP_001028513.2 Accepted alive Link to Nucleotide Sequence:NM_001033341.2Link to Protein Sequence:NP_001028513.2Re-query CCDS DB by Nucleotide ID:NM_001033341Re-query CCDS DB by Protein ID:NP_001028513Link to BLAST:NP_001028513.2

Chromosomal Locations for CCDS 50338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 84208742 84210081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84315806 84315984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84342946 84343066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84350900 84350983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84354525 84354691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84432360 84432434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84552870 84552984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84558327 84562986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6741 nt):
ATGGATTCTGAGAATAAACATGACAATGATGAGGATGAAAGTGTTAAGGGAGCAAAAGATCCGAGGAGTG
TTTCATCCCGCGATGACAGTTCTGAGCCTGTATCTGATGACATGGCAAATGTCTCTGAGAATTTTACGAG
CAAAAGAGTTTTTTCCGAGTCGTCCAACTCGGACGGTGTTGCTGCGGAGGAATACAGAAGTGAGCGTGCT
TCCAAGCGACTGAGAACAGAGGCACTGGAGCCTGAGACAAGAGAGCAGGGTGCCTGTGGGTTGGGCACTG
TGGAAGCTAATGTCCATTTGGCTGAAATGGGAAAGGAGGCCTTTCCAGCAAACTGCTCAGAAGGAGGCAG
CGCTCTTCCCAGTGTTTTCTCCCCATCTTGTGATTTTAGCACATCTAATATTCTTCCTCTGAAAGTAGAT
GAAGTGAAAAAGCCTGCTCGGGAAATGGTTTCCCTTGTTCCTGAAAGACACAATCCTTTTCCTCCAGAAG
AAAGGAGCATTAGTTGTAGCTTTGGAAGTGTAGAGACAGGACTCAGGTGCGGCGTGTGTGGCTGTTCATT
TTCCTCTTGCTCTGCTTTGGAAAAGCATGTGGAGTGTCATGTGGAAGAGGGGAAGGAACGGACCTGCTGC
CACTGTAGCCACAGAGCAGAGAGCAGCTCATCTCCTCATGAGCATGTCAGACATACTCATGGGCCGCAGA
AAGTCTTTTCCTGTGATCTCTGTGGCTTCCAATGTGCAGAAGAAAACCTGTTGAATGCACATTATCTTGG
CAAAACACACCTTCGTCGTCAGAACCTTGCTGCTCGTGGAGGATTCGTACAGATCTTAACAAAACCATCT
TTTCCTAAAAAAGCCTGTGTCATGGGAACAAAAAATGTTAGAACAAAACCAAGAGCTTCTAAACCAATAG
CAAAGACTGGGGATTCAAGAGTAGTGCCGAGTACTGGGAATGACTTTAAAGACTGCAGAGGAGCCCCTTC
TGAAGACAGTGCTGGTGGTAGTGAGCTCCTTGTTGAAATGGTGCCATCTAGGAAAATCTCATCAGGCAAA
GCACATGTAGTTGAGGAAAATGTTAGTTTTGGTGTAGCTCAAAATCCTGAAAATCAGAACAAACAGCTAG
GGGGCTTAGTAAGCTCAGAGGGTCTTTTAAATAAACCAGAATCCACTAAAAATGCCCTACAGATGGCGCA
TGTCAGTATCAGTACCACCTCAAGGCCAAGATCTGAGCGAAACCTCCTAGTGTTGGGTAATAGCTTTCGC
AGACGAAGTGGCACTTTTACTTTAAAGGGCCAGGCAAAGAAAAGGTTTAATCTTCTAGGAATTAATAAAA
GGGGTACAAATGAAACTCAGAGGATGTATATGAAACACTTTAGAACACAGATGAAAACAAACGCACAGCC
AGTGCTGGAACAAGTAGAGATGAGCAAAGATGTTCAAAGTCTGTGTGTGACTACCTCAGACAACCCAGAA
GTGATGCAGGACAAGACAGCCTTCTGTCTTTCAGGCTCCACACGGCTGGGCTCCCTGCCAGTAAAGCCAG
CTGACCACCAGCTCTCTGTGCAGTGCACTTGTACAGAGTGTGGCCAGATAGCTGCAAATAAGACAGACTT
CGAAGTTCACGTTAAACAGTGCCATGGAAGAGAGATGCAGTTTCATTGTCAGACTTGTGACTTTTCTAGT
CCGTCAAGGAGAGACTTGGAGGAGCACGTGCACAGTAATCAGCATCAGCACATGACACCTGTCCTCAGCT
GTCAGTGTTGTTCCTTTATTTCCTTGAATGAAACAGGTCTTAGAGACCATATGAAGGAGAAGCATGGCAT
GGGCTTTTTCTGCACCTCTTGTAATCTGTTCTTGTCTGAGAAAGATGTGGAAGAACACAGAGCAACCGAG
TCACATAATAGTTTAGTGGTTCAACCAAAGACGGCTTCATCATTGAGTGGTGATTCTGTTCTACCTTTCA
GTACTGTAGAATCAGAAAACCCGGCCGATTCTAGAGAAGACTCAGGGAAGGCCGCGCAGGAAGGACCTGC
TGAGTCCAGGGCAAGCCATGGAACTGAAGCACGGCATTCAAGTAAGCCGCAGTTTCAGTGTAAGAAGTGT
TTTTATAAAACGAGGTCCTCCACTGTTCTCACGAGACACATAAAGCTTCGACATGGACAGGACTATCATT
TTCTCTGTAAAGCATGCAATCTTTATTCTTTGAGCAAAGAAGGAATGGAGAAGCACATTAAAAGAAGCAA
ACATCTTGAAAATGCTAAGAAAAACAATATTGGTTTAAGTTTTGAAGAGTGCATTGAAAGAGTATGTATA
GGTGCAAATGATAAAAAAGAAGAGTCCAGTGTTTCTGGAAGTGGAAGGCCCGAAGGCCATGTTGGTGTGC
AATCACAGGAGCATTCCCAACGTGAACAGAGTATGCTAACACCCAAGGAGCTTCCACAGTCTGGTGTCAT
CACCAAAGAGGATGAATTAGGCTTAGCCACTACTCCAAAGAGAGGGAGGCCCAAAGGCAGCATTTCTCGG
ACTTGTTCACACTGTGGACTTTTGGCCTCTAGTATTACAAATTTGACTGTGCACATCAGGCGTAAACACA
GTCACCAGTATAGTTACTTGTGCAAAGTATGTAAGTATTATACTGTAACTAAAGGAGATATGGAACGTCA
TTGTGCCACCAAGAAACATAAAGGACGGGTAGAAATAGAAGCAAATGGGAAACAAAGTTCAGACATAGTT
GTTGGCCCAGAAGGTGGTAATCTTGAAGCATGTAAGGATAGCACCTCTCTAGCAGTGACCGTTTCTGACG
CACAGGCTAGCAAGCCGGCTAAGTCAGACACACGCACTTTAGAAACGCCGGGAGTGGGCATTGGAAATGC
AGGTGATGCTGAAGCTGGGAGTGTATTTCCTTCTGGAGATGGAGAGCTTAGCAGTCAACTCTCTGATAAA
AAGGGACAGCTATCTCTAGAGACAGAGGACCTGCTACAGCTTGATGATGCATGCTCTCAGAGAGAGGTTG
CAGGTTCAAGTGACAATAAGTGTCTTCAGTGTGAGTTCAGTGCTCACTCTGCCGCTTCACTCGAGCTGCA
TGTGAAAAGGAAGCACACCAAAGAGTTCCAGTTTTACTGTATGGCCTGTGATTACTATGCGGTGACTCGC
AGAGAGATGACGAGGCATGCTGCAACAGAGAAGCATAGAATGAAAAGGCAGTCTTACCTCAGCGCTTCTA
GTGTGGAAGCAGGTTCTTCAGAAATATCCAAGAACATCACTATACCCGAGGAGGAGCATTCACACAATTC
TGAGGAATTTCAAATACATCCACACCAGTCATCTGGTACTCTCCAATGTAGAAATCCTGCAGATTGTTCT
ATTTTAGATGATAATACCAATTTGGGTATGTCTAAAGTACTCTGTGCTCCTGATTCAGTGACAGTTGTGA
CTGAGCAAGAATCTAATTTTAGTGAAGGTCACTCCTTTTGTGAGACCTTACAGCAGCCCCTTGTTAAGGA
CAAAAGTATGAAACCCAGGGAGATAGTGTCCCCTAACACTCCCTCTAACCTCAGCCTCCCAGGCTGTCTT
CAGAGTGAAAACCTAGCGAGCTCTGCTGTGGACTGTGAGACAGCAAAGAAAAACCGTGATGTGTTGGATG
CTGTTGGGGATAGAAGTACACCCTGTGAAGATGAGGGAGGCAGTGTGGATGATAGTGAAGAAAAAATTCT
TGACAAGTCCCCCTGCCCTGGAGACCCAGATGGGGGCCATTCTGCCGAATCTACTTCCTCTGTGGTAATG
AAAATACCAAGAGAACAACTGGACCTGGATGGCGGTGGCCAGAACAAGGTTGGATGTGAGCAGACTTCTG
AAGATTTAAAAGATGTGCAAGCAAATCCTATTCTTGAGAATAAGGAAATTCTGATAAATTCACAAGAAGA
AGCTGAAGTCATTTTGGAAGAGGATGCCCCAACCTCGAATGGCACAGCTGACAGTAATGATGTTTATGAG
ACTATAATAAGTATTGATGACAAAGGGCAAACAATGTACAGTTTTGGCAGGTTTGATTCGTCCATAATTA
GAATAAAAACTGAAGATGGTGAATTGGTAGAACAGCCAGAAGAGGGTCTGACGGCGACAGGAGGGAGAGT
TAGTGAGTTGCCCCTGAAAGACTGTGCTCAGGGGTTGAAGAAGAAGAAAGTTGAAGGTGGTTCTTTTGGT
GAGTCCACACGAATCCGGTGTGATGATTGTGGTTTCTTAGCAGATGGACTGAGTGGCCTGAATGTTCATA
TAGCCATGAAGCATCCTACAAAAGAGAAGCACTTTCATTGTTTACTATGTGGAAAATCCTTCTATACTGA
GAGCAACCTTCACCAGCATTTGGCTAGTGCTGGTCACATGAGAAATGAACAGGCCAGTGTAGAAGAGCTT
CCAGAAGGAGGGGCCACCTTCAAATGTGTCAAGTGTACAGAGCCCTTTGATTCGGAACAGAATTTATTTC
TGCATATTAAAGGACAGCATGAGGAGTTGCTGCGGGAGGTAAACAAGTACATAGTGGAAGACACCGAGCA
GATCAATCGGGAGAGAGAGGAGAACCAGGGCAACGTCTGCAAGTATTGTGGGAAGATGTGTCGGAGTAGC
AACTCCATGGCCTTTCTGGCTCACATTCGGACTCACACAGGATCAAAACCATTCAAGTGCAAGATATGCC
ATTTTGCAACAGCTCAGCTTGGAGATGCCAGAAACCATGTGAAAAGGCACCTTGGGATGAGGGAGTACAA
GTGTCACGTCTGTGGGGTTGCTTTTGTGATGAAGAAACACTTAAATACTCACCTGCTAGGCAAGCACGGA
GTTGGCACCCCAAAGGAAAGGAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCT
TGAACAACCACATGAAACTGCACACGGGAGAAAAGCCTTTTAAGTGCACCTGGCCCACGTGCCACTACTC
ATTCCTCACAGCATCAGCGATGAAAGACCACTACAGGACGCACACAGGCGAGAAGTCGTTTCTCTGTGAC
CTCTGTGGCTTCGCCGGTGGGACCCGGCATGCCCTCACCAAGCACCGTCGGCAGCATACAGGGGAAAAGC
CTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGTCATAAGCGTGTGCA
CACTGGAGAGAAGCCATACAGGTGCCCTTGGTGTGACTACAGGTCAAATTGTGCTGAGAATATCCGCAAA
CACATTTTACACACCGGCAAACATGAAGGTGTCAAGATGTACAACTGCCCAAAATGCGACTATGGGACGA
ATGTCCCCGTGGAGTTCCGAAACCACCTGAAAGAGCAGCACCCCGACATTGAGAACCCTGACCTCGCGTA
CTTGCATGCTGGCATCGTGTCCAAGTCCTATGAGTGCCGCCTGAAAGGACAAGGAGCCACGTTTGTGGAG
ACAGACAGCCCCTTCACTGCAGCCACCCTGGCGGAGGAGTCGCCTGTCAAGGAGAGGTCCTTGAGGAGCA
GCAAGCGGCAGGCTGCGTCCCCTGAGCAGGTCCAGCAGGTCATCATCATCCAGGGCTACGATGGCGAGTT
CGCCCTGGACGCCTCCGTGGAAGAGACTGCTGCGGCCACACTGCAGACGCTGGCGATGGCTGGCCAAGTG
GCCAGGGTGGTGCACATCACAGAACATGGGCAGGTCATTGCCACAAGTCAGAACGGGTCGCATGTGGGCA
GTGTGGTACCTGGACCCATCCTCCCTGAGCAGTTGGCAGACGGAACCACCCAGGTGGTTGTCATGGGGGG
TTCCATGGAAAGTCACAGTGTGGACGAGGCCCTCAGCCCAGGTGCTGCTGTCATACAGCAGGTCACCAAG
CAGGAGGTCTTAAGTCTCTCTGAGGCTGGAGTCCCTCCATCTGACAACTCCTCAGCCTTAGATGCACTGC
TGTGTGCTGTCACTGAGTTGGGAGAGGTGGAGGGCAGAGTGGGGCATGAGGAAAAAGGTCGGCCCAGCCA
CAAGGACGTGCTGATCCAGCTGCCCAGCCAGGAAGCGGCCCAGGCTCACGCCAAGGCGGAGGCCACGGAG
GCTCAGCTGTTCCAAGATGTTGAGGAGAGTCCAGCATCCATGGAAGTACTGACCCAGGTTGTCCGCCCCT
CAACCATCATCACGTCTCAGGAACGAGCCCAGGTGGCCTTCAAGAAGATGGTTCAGGGAGTCCTGCAGTT
TGCTGTCTGTGACACGGCTGCAGCTAGCCAGCTGATAAAGGATGGCGTTACTCAAGTCATTGTGAATGAA
GAGGGCGCTGTCCACATGGTGGCCGGAGAAGGCTCCCAGTTCATCATGCAGGAGGCTGAGACCCATGGCC
TGCGGGTGCCAGCCGAGCACATGGACCTGGTAGAGTCAGAAGGAGAGATCTCTCAGATCATTGTAACAGA
AGAGCTAGTCCAAGCCATGGTCCGTGAGTCCAACAGCAGCTTCCCCGAGGGCGCCACTCACTACATTGTG
ACCGAGTTGCCTCCGGGTGTACAGGAGGACACAGGAGTTTACTCCCACACTGTGATAGAGACAGCCAGCT
CTCCAGAGATTCTGCAGGCTGGGGCTGCACTCAGTGCTGAGGCTGTGGGTTCCAGCAGCACGGAACAGTT
GACGAGCATGGTCATCTATACCCAGGATGGCTCCCCAGCAGCCACAGTGATCCAGAGCCAAAGAGAAAAC
AGTGAGCTCCAAGAAGCGTGA

Translation (2246 aa):
MDSENKHDNDEDESVKGAKDPRSVSSRDDSSEPVSDDMANVSENFTSKRVFSESSNSDGVAAEEYRSERA
SKRLRTEALEPETREQGACGLGTVEANVHLAEMGKEAFPANCSEGGSALPSVFSPSCDFSTSNILPLKVD
EVKKPAREMVSLVPERHNPFPPEERSISCSFGSVETGLRCGVCGCSFSSCSALEKHVECHVEEGKERTCC
HCSHRAESSSSPHEHVRHTHGPQKVFSCDLCGFQCAEENLLNAHYLGKTHLRRQNLAARGGFVQILTKPS
FPKKACVMGTKNVRTKPRASKPIAKTGDSRVVPSTGNDFKDCRGAPSEDSAGGSELLVEMVPSRKISSGK
AHVVEENVSFGVAQNPENQNKQLGGLVSSEGLLNKPESTKNALQMAHVSISTTSRPRSERNLLVLGNSFR
RRSGTFTLKGQAKKRFNLLGINKRGTNETQRMYMKHFRTQMKTNAQPVLEQVEMSKDVQSLCVTTSDNPE
VMQDKTAFCLSGSTRLGSLPVKPADHQLSVQCTCTECGQIAANKTDFEVHVKQCHGREMQFHCQTCDFSS
PSRRDLEEHVHSNQHQHMTPVLSCQCCSFISLNETGLRDHMKEKHGMGFFCTSCNLFLSEKDVEEHRATE
SHNSLVVQPKTASSLSGDSVLPFSTVESENPADSREDSGKAAQEGPAESRASHGTEARHSSKPQFQCKKC
FYKTRSSTVLTRHIKLRHGQDYHFLCKACNLYSLSKEGMEKHIKRSKHLENAKKNNIGLSFEECIERVCI
GANDKKEESSVSGSGRPEGHVGVQSQEHSQREQSMLTPKELPQSGVITKEDELGLATTPKRGRPKGSISR
TCSHCGLLASSITNLTVHIRRKHSHQYSYLCKVCKYYTVTKGDMERHCATKKHKGRVEIEANGKQSSDIV
VGPEGGNLEACKDSTSLAVTVSDAQASKPAKSDTRTLETPGVGIGNAGDAEAGSVFPSGDGELSSQLSDK
KGQLSLETEDLLQLDDACSQREVAGSSDNKCLQCEFSAHSAASLELHVKRKHTKEFQFYCMACDYYAVTR
REMTRHAATEKHRMKRQSYLSASSVEAGSSEISKNITIPEEEHSHNSEEFQIHPHQSSGTLQCRNPADCS
ILDDNTNLGMSKVLCAPDSVTVVTEQESNFSEGHSFCETLQQPLVKDKSMKPREIVSPNTPSNLSLPGCL
QSENLASSAVDCETAKKNRDVLDAVGDRSTPCEDEGGSVDDSEEKILDKSPCPGDPDGGHSAESTSSVVM
KIPREQLDLDGGGQNKVGCEQTSEDLKDVQANPILENKEILINSQEEAEVILEEDAPTSNGTADSNDVYE
TIISIDDKGQTMYSFGRFDSSIIRIKTEDGELVEQPEEGLTATGGRVSELPLKDCAQGLKKKKVEGGSFG
ESTRIRCDDCGFLADGLSGLNVHIAMKHPTKEKHFHCLLCGKSFYTESNLHQHLASAGHMRNEQASVEEL
PEGGATFKCVKCTEPFDSEQNLFLHIKGQHEELLREVNKYIVEDTEQINREREENQGNVCKYCGKMCRSS
NSMAFLAHIRTHTGSKPFKCKICHFATAQLGDARNHVKRHLGMREYKCHVCGVAFVMKKHLNTHLLGKHG
VGTPKERKFTCHLCDRSFTEKWALNNHMKLHTGEKPFKCTWPTCHYSFLTASAMKDHYRTHTGEKSFLCD
LCGFAGGTRHALTKHRRQHTGEKPFKCDECNFASTTQSHLTRHKRVHTGEKPYRCPWCDYRSNCAENIRK
HILHTGKHEGVKMYNCPKCDYGTNVPVEFRNHLKEQHPDIENPDLAYLHAGIVSKSYECRLKGQGATFVE
TDSPFTAATLAEESPVKERSLRSSKRQAASPEQVQQVIIIQGYDGEFALDASVEETAAATLQTLAMAGQV
ARVVHITEHGQVIATSQNGSHVGSVVPGPILPEQLADGTTQVVVMGGSMESHSVDEALSPGAAVIQQVTK
QEVLSLSEAGVPPSDNSSALDALLCAVTELGEVEGRVGHEEKGRPSHKDVLIQLPSQEAAQAHAKAEATE
AQLFQDVEESPASMEVLTQVVRPSTIITSQERAQVAFKKMVQGVLQFAVCDTAAASQLIKDGVTQVIVNE
EGAVHMVAGEGSQFIMQEAETHGLRVPAEHMDLVESEGEISQIIVTEELVQAMVRESNSSFPEGATHYIV
TELPPGVQEDTGVYSHTVIETASSPEILQAGAALSAEAVGSSSTEQLTSMVIYTQDGSPAATVIQSQREN
SELQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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