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Report for CCDS50330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50330.1 Public Mus musculus 18 Slc14a1 23 108 98 CCDS HistoryNCBI Gene:108052Re-query CCDS DB by CCDS ID:50330.1Re-query CCDS DB by GeneID:108052See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160292.7 ENSMUSP00000125114.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160292.7Link to Ensembl Protein Viewer:ENSMUSP00000125114.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160292Re-query CCDS DB by Protein ID:ENSMUSP00000125114
Original member Current member NCBI NM_001171010.1 NP_001164481.1 Accepted alive Link to Nucleotide Sequence:NM_001171010.1Link to Protein Sequence:NP_001164481.1Re-query CCDS DB by Nucleotide ID:NM_001171010Re-query CCDS DB by Protein ID:NP_001164481Link to BLAST:NP_001164481.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164481.1 440 Q8VHL0-2 440 100% 0 0

Chromosomal Locations for CCDS 50330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 78102395 78102568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78104030 78104079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78109592 78109726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78109909 78110056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78111354 78111546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78113666 78113794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78115721 78115910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78116373 78116529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 78120148 78120294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGAATGGACAATCTTTGACTGGTGGCACTGATGACGCCCATCACGGTCCTCTTTGGATAGACCCTTTCG
GAAATAGAGGCGATAAGGCAGCGCCAGAAGGCTTCAGACGTCTAAGCTTGGCCCTGGCACAAAGGTGGCG
AGAACAGGAGCCAGAGGAAGAGATAGCCATGGAAGATAGTCCCACCATGGTTAAAGTAGACCGGGGTGAA
AACCAGATTTTATCATGCCGCGGGAGAAGGTGTGGCTTCAAAGTACTTGGCTACGTCACGGGTGACATGA
AGGAATTCGCCAACTGGCTGAAAGACAAACCCGTGGTGCTCCAGTTCATGGACTGGATACTTCGTGGCAT
ATCCCAGGTGGTGTTTGTCAGCAACCCCATCAGTGGAATCCTGATTCTGGTGGGACTTCTGGTCCAGAAC
CCCTGGTGGGCTCTCTGTGGCTGTGTAGGAACTGTGGTCTCCACTCTGACAGCCCTCTTGCTTAGCCAAG
ACAGATCGGCGATAGCAGCGGGGCTCCAAGGTTACAATGCCACCCTGGTAGGCATCCTCATGGCTGTCTT
CTCAAACAAGGGCGACTATTTCTGGTGGCTGATATTCCCTGTATCTGCTATGTCTATGACTTGCCCGGTT
TTCTCGAGCGCGTTGAGCTCCGTGCTCAGCAAGTGGGACCTGCCCGTCTTCACTCTCCCTTTCAACATGG
CGTTGTCGATGTACCTGTCAGCCACAGGACACTACAATACGTTTTTCCCAAGTAAACTCTTCACACCTGT
CAGCTCCGTGCCCAACATCACGTGGTCTGAGCTCAGCGCCCTGGAGCTATTGAAGTCTCTTCCGGTGGGA
GTCGGTCAGATATATGGCTGTGACAACCCGTGGACAGGCGGCATTTTCCTATGTGCTATCCTGCTCTCCT
CCCCACTCATGTGCCTGCACGCTGCTATTGGATCGTTGCTGGGTGTCATCGCGGGACTCAGTCTTGCAGC
TCCATTTGAAGACATCTACTTTGGGCTCTGGGGTTTCAACAGCTCTCTGGCCTGCATTGCAATTGGAGGG
ATGTTCATGGCACTCACCTGGCAGACCCACCTCCTGGCTCTTGCCTGTGCCCTGTTCACTGCCTACTTCG
GAGCCTGTATGGCACACCTGATGGCTGTGGTTCACCTGCCAGCTTGTACCTGGTCCTTCTGTTTGGCCAC
ACTACTCTTTCTCTTGCTGACCACGAAAAATCCCAACATCTACAGGATGCCCCTCAGCAAAGTTACCTAC
TCTGAGGAGAACCGCATCTTCTACCTCCAAAACAAGAAAAGGATGGTTGAAAGCCCCCTGTAA

Translation (440 aa):
MNGQSLTGGTDDAHHGPLWIDPFGNRGDKAAPEGFRRLSLALAQRWREQEPEEEIAMEDSPTMVKVDRGE
NQILSCRGRRCGFKVLGYVTGDMKEFANWLKDKPVVLQFMDWILRGISQVVFVSNPISGILILVGLLVQN
PWWALCGCVGTVVSTLTALLLSQDRSAIAAGLQGYNATLVGILMAVFSNKGDYFWWLIFPVSAMSMTCPV
FSSALSSVLSKWDLPVFTLPFNMALSMYLSATGHYNTFFPSKLFTPVSSVPNITWSELSALELLKSLPVG
VGQIYGCDNPWTGGIFLCAILLSSPLMCLHAAIGSLLGVIAGLSLAAPFEDIYFGLWGFNSSLACIAIGG
MFMALTWQTHLLALACALFTAYFGACMAHLMAVVHLPACTWSFCLATLLFLLLTTKNPNIYRMPLSKVTY
SEENRIFYLQNKKRMVESPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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