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Report for CCDS50303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50303.1 Public Mus musculus 18 Afap1l1 23 108 98 CCDS HistoryNCBI Gene:106877Re-query CCDS DB by CCDS ID:50303.1Re-query CCDS DB by GeneID:106877See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120472.1 ENSMUSP00000113286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120472.1Link to Ensembl Protein Viewer:ENSMUSP00000113286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120472Re-query CCDS DB by Protein ID:ENSMUSP00000113286
Original member Current member NCBI NM_178928.4 NP_849259.2 Accepted alive Link to Nucleotide Sequence:NM_178928.4Link to Protein Sequence:NP_849259.2Re-query CCDS DB by Nucleotide ID:NM_178928Re-query CCDS DB by Protein ID:NP_849259Link to BLAST:NP_849259.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849259.2 768 Q8BZI0-1 768 100% 0 0

Chromosomal Locations for CCDS 50303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61731287 61731310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61733704 61733832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61735568 61735746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61736783 61736947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61737496 61737607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61738684 61738756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61739124 61739269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61741630 61741841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61743278 61743430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61743667 61743760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61746778 61746870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61748696 61748875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61751666 61751877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61752509 61752607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61755563 61755674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61756840 61756934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61757652 61757735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61758600 61758728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61786576 61786591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGGACCGAAGCAGGGTGCTGGAACAGCTAATCCCAGAGCTCACCGGACTCCTCAGCCTCCTGGACCATG
AGTATCTCAGCGACAGCACCCTGGAGAAGAAGATGGCTGTGGCCTCCCTCCTGCAGAGCCTGCAGCCCCT
CCCAGCAAAGGAAGTCTCTTTCCTGTATGTGAACACTGCAGACCTGCACTCGGGGCCCAGCTTTGTGGAG
TCTCTCTTTGAAGAATTCGACTGTGACCTGGGTGACCTTCGGGATATGTCGGACGATGGGGAACCCAGCA
AAGGAGCCAGCCCTGAGCCAACCAAGAGCCCATCTCTGAGAAGCGCAGCTGCTGATGTGCCTCCACCCTT
GCCCAACAAGCCCCCGCCCGAGGACTACTATGAAGAAGCCCTTCCCCTGGGGCCCGGCAAGTCCCCCGAG
TATATCAGCTCTCACAATGGCTGCAGCCCTGCACAGTCGATTGTGGACGGTTACTACGAGGACGCAGACA
ACAGCTACCCCACCACAAGGATGAATGGAGAACTGAAGAACTCCTACAATGACTCTGACGCCATGAGTAG
CTCCTATGAATCCTACGACGAGGAGGAGGAGGAAGAGAAGGGGCGGCAGCCCAAGCACCAGTGGCCCTCG
GAAGAGGCCTCCATGCACCTGGTTAGGGACTGCAGGATATGTGCCTTCCTGCTTCGGAAAAAGCGCTTCG
GGCAGTGGGCCAAGCAGCTGACGGTCATCAAGGAGGAGCAGCTACTGTGTTACAAAAGCTCCAAGGACCG
ACAGCCACACCTGAGGCTGGCGCTAGACGTCTGCACTGTCATCTATGTGCCCAAGGACAGCAGGCACAAG
CGGCACGAGCTGCGCTTCTCCCAGGGGGCCACAGAGGTGTTAGTGCTGGCTCTGCAGAGCAGGGAGCAGG
CCGAGGAGTGGCTGAAGGTCATCCGAGAGGTCAGCCGGCCCATTGTGGGAGCAGAGGGCTTGGAGGTCCC
CAGATCCCCAGTCATCCTATGCAAGGCGGATCAGGACAAGAGGTTGTCCCAAGAGAAACAGAACTCAGAC
TCCGACAGCCTGGGCATGAATGACAGTGGTTCCACTCTCGGCCGTCGAGAAGCCTGTGAACATGGCAAAG
GGAAGAAGAACAGCCTGGCTGAGCTTAAGGGCTCCATGAGCAGGGCTGCCGGCCGCAAGATCACGCGCAT
CATCAGTTTCTCCAAGAAGAAGGCGCTGTCCGAGGACCTGCAGACATTCTCCAGTGAGGACGAGGTTCCA
TGCTGTGGCTACCTGAATGTGCTGGTAAACCAAGGCTGGAAGGAACGGTGGTGTCGCCTCAGGTGCAACA
CTCTCTATTTCCACAAAGACCGCACAGACCTGCACACCCACGTGAATTCCATAGCCCTCAGGGGCTGCGA
GGTAGCCCCAGGCTTTGGACCCAGGCACCCCTTTGCCTTCAGGATCCTGCGCAATCGACAGGAGGTGGCC
ATCCTGGAGGCAAGCTGCTCAGAGGACATGGGCCGCTGGCTCGGTCTGCTGCTAGTGGAGATGGGCTCCA
AAGTCACCCCAGAGGCACTGCACTATGACTACGTCGACGTGGAGACCTTAACCAGCATCGTCAGTGCTGG
GCGCAACTCCTTCCTGTATGCACAGTCCTGCCAGGATCAGTGGCCTGAGCCCCGCATCTACGATGAGGTT
CCTTATGAAAAGGTGCAGGATGAGGAGCCCCAGCGCCCCACCGGGGCTCAGGTGAAGCGCCACGCCTCCT
CCTGCAGTGAGAAGTCCCACCGTGCGGACCCGCAGGTCAAAGTCAAGCGCCACGCCTCCAGTGCCAATCA
ATACAAGTACGGCAAGAACCGGGCGGAGGAGGATGCCCGAAGGTACCTGGTAGAAAAAGAGAGGCTGGAG
AAAGAGAAGGAAACGATTCGGACAGAACTGACGGCCTTGCGACAGGAGAAGAAAGAGCTGAAGGAAGCCA
TTCGGAACAACCCAGGAGCAAAGTCGAAGGCCTTGGAAGAGGCCGTGGCCACTCTGGAAGCTCAATGCCG
TGCCAAGGAAGAGCAGAGGATCGACCTGGAGCTCAAGCTGGTAGCTGTGAAGGAGCGCTTGCAGCAGTCC
CTGGCCGGGGGTCCGGCCCTCGGTCTGTCCGTGAGCAACAAGAACAAGAGCCAAGACACTACAAATAAAC
CCCAAAGCAATGCCCCAGAGCAATCTCTCCCTGTCAACTGTGTTTCTGAACTGAGAAAGAGGAGTCCATC
CATTGTGACCTCCAACCAAGGGAGGGTGCTACAGAAGGCCAAGGAATGGGAAATGAAGAAGACCTAG

Translation (768 aa):
MDRSRVLEQLIPELTGLLSLLDHEYLSDSTLEKKMAVASLLQSLQPLPAKEVSFLYVNTADLHSGPSFVE
SLFEEFDCDLGDLRDMSDDGEPSKGASPEPTKSPSLRSAAADVPPPLPNKPPPEDYYEEALPLGPGKSPE
YISSHNGCSPAQSIVDGYYEDADNSYPTTRMNGELKNSYNDSDAMSSSYESYDEEEEEEKGRQPKHQWPS
EEASMHLVRDCRICAFLLRKKRFGQWAKQLTVIKEEQLLCYKSSKDRQPHLRLALDVCTVIYVPKDSRHK
RHELRFSQGATEVLVLALQSREQAEEWLKVIREVSRPIVGAEGLEVPRSPVILCKADQDKRLSQEKQNSD
SDSLGMNDSGSTLGRREACEHGKGKKNSLAELKGSMSRAAGRKITRIISFSKKKALSEDLQTFSSEDEVP
CCGYLNVLVNQGWKERWCRLRCNTLYFHKDRTDLHTHVNSIALRGCEVAPGFGPRHPFAFRILRNRQEVA
ILEASCSEDMGRWLGLLLVEMGSKVTPEALHYDYVDVETLTSIVSAGRNSFLYAQSCQDQWPEPRIYDEV
PYEKVQDEEPQRPTGAQVKRHASSCSEKSHRADPQVKVKRHASSANQYKYGKNRAEEDARRYLVEKERLE
KEKETIRTELTALRQEKKELKEAIRNNPGAKSKALEEAVATLEAQCRAKEEQRIDLELKLVAVKERLQQS
LAGGPALGLSVSNKNKSQDTTNKPQSNAPEQSLPVNCVSELRKRSPSIVTSNQGRVLQKAKEWEMKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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