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Report for CCDS50289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50289.1 Public Mus musculus 18 Lox 23 108 98 CCDS HistoryNCBI Gene:16948Re-query CCDS DB by CCDS ID:50289.1Re-query CCDS DB by GeneID:16948See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025409.8 ENSMUSP00000025409.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025409.8Link to Ensembl Protein Viewer:ENSMUSP00000025409.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025409Re-query CCDS DB by Protein ID:ENSMUSP00000025409
Original member Current member EBI ENSMUST00000171470.7 ENSMUSP00000129247.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171470.7Link to Ensembl Protein Viewer:ENSMUSP00000129247.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171470Re-query CCDS DB by Protein ID:ENSMUSP00000129247
Original member Current member NCBI NM_001286181.1 NP_001273110.1 Accepted alive Link to Nucleotide Sequence:NM_001286181.1Link to Protein Sequence:NP_001273110.1Re-query CCDS DB by Nucleotide ID:NM_001286181Re-query CCDS DB by Protein ID:NP_001273110Link to BLAST:NP_001273110.1
Original member Current member NCBI NM_001286182.1 NP_001273111.1 Accepted alive Link to Nucleotide Sequence:NM_001286182.1Link to Protein Sequence:NP_001273111.1Re-query CCDS DB by Nucleotide ID:NM_001286182Re-query CCDS DB by Protein ID:NP_001273111Link to BLAST:NP_001273111.1
Original member NCBI NM_010728.3 NP_034858.2 Updated not alive Link to Nucleotide Sequence:NM_010728.3Link to Protein Sequence:NP_034858.2Re-query CCDS DB by Nucleotide ID:NM_010728Re-query CCDS DB by Protein ID:NP_034858
Current member NCBI NM_010728.4 NP_034858.2 Accepted alive Link to Nucleotide Sequence:NM_010728.4Link to Protein Sequence:NP_034858.2Re-query CCDS DB by Nucleotide ID:NM_010728Re-query CCDS DB by Protein ID:NP_034858Link to BLAST:NP_034858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273110.1 411 P28301 411 100% 0 0
NP_001273111.1 411 P28301 411 100% 0 0
NP_034858.2 411 P28301 411 100% 0 0

Chromosomal Locations for CCDS 50289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 52519227 52519233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52520794 52520909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52521243 52521338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52525083 52525239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52526901 52527038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52528279 52528387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 52528717 52529329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGCGTTTCGCCTGGGCTGTGCTCCTTCTGGGGCCACTGCAGCTTTGTCCCCTTCTCCGCTGCGCCCCGC
AGACCCCGCGCGAGCCGCCCGCCGCCCCTGGTGCCTGGCGCCAGACAATCCAATGGGAGAACAACGGGCA
GGTGTTCAGTCTGCTGAGCCTCGGGGCGCAGTACCAGCCTCAGCGACGCCGCGACCCCAGTGCCACTGCC
CGGAGACCCGACGGCGACGCAGCCTCGCAGCCGCGCACGCCCATTCTTCTGCTGCGTGACAACCGCACCG
CCTCTACCCGTGCGAGGACGCCAAGCCCGTCTGGGGTCGCCGCGGGTCGTCCCCGGCCCGCCGCCCGCCA
CTGGTTCCAAGCTGGTTTCTCGCCGTCGGGGGCTCGCGATGGAGCCTCACGGCGCGCGGCGAACCGGACT
GCATCGCCACAGCCTCCGCAGCTCAGTAATCTGAGGCCACCCAGCCACATAGATCGCATGGTGGGCGACG
ACCCCTACAATCCCTACAAGTACTCCGACGACAACCCCTATTATAACTACTATGACACGTATGAGAGGCC
CCGGCCCGGGAGCAGGAACCGACCTGGATACGGCACCGGTTACTTCCAGTACGGTCTCCCGGACCTGGTG
CCCGACCCCTACTACATCCAGGCTTCCACGTACGTCCAGAAGATGTCTATGTACAACCTGAGATGCGCTG
CGGAAGAAAACTGCCTGGCCAGTTCAGCATATAGGGCGGATGTCAGAGACTATGACCACAGGGTACTGCT
ACGATTTCCGCAAAGAGTGAAGAACCAAGGGACATCGGACTTCTTACCAAGCCGCCCTCGGTACTCCTGG
GAGTGGCACAGCTGTCACCAACATTACCACAGCATGGACGAATTCAGCCACTATGACCTGCTTGATGCCA
ACACACAGAGGAGAGTGGCTGAAGGCCACAAAGCAAGCTTCTGTCTGGAGGACACGTCCTGTGACTATGG
GTACCACAGGCGCTTTGCGTGCACTGCACACACACAGGGATTGAGTCCTGGATGTTATGACACCTATGCG
GCAGACATAGACTGCCAGTGGATTGATATTACAGATGTACAACCTGGAAACTACATTCTAAAGGTCAGTG
TAAACCCCAGCTACCTGGTGCCTGAATCAGACTACACTAACAATGTTGTACGCTGTGACATTCGCTACAC
AGGACATCATGCCTATGCCTCAGGCTGCACAATTTCACCGTATTAG

Translation (411 aa):
MRFAWAVLLLGPLQLCPLLRCAPQTPREPPAAPGAWRQTIQWENNGQVFSLLSLGAQYQPQRRRDPSATA
RRPDGDAASQPRTPILLLRDNRTASTRARTPSPSGVAAGRPRPAARHWFQAGFSPSGARDGASRRAANRT
ASPQPPQLSNLRPPSHIDRMVGDDPYNPYKYSDDNPYYNYYDTYERPRPGSRNRPGYGTGYFQYGLPDLV
PDPYYIQASTYVQKMSMYNLRCAAEENCLASSAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPRYSW
EWHSCHQHYHSMDEFSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAHTQGLSPGCYDTYA
ADIDCQWIDITDVQPGNYILKVSVNPSYLVPESDYTNNVVRCDIRYTGHHAYASGCTISPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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