NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50143.1 Public Mus musculus 17 Mocs1 23 108 98 CCDS HistoryNCBI Gene:56738Re-query CCDS DB by CCDS ID:50143.1Re-query CCDS DB by GeneID:56738See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173033.7 ENSMUSP00000133694.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173033.7Link to Ensembl Protein Viewer:ENSMUSP00000133694.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173033Re-query CCDS DB by Protein ID:ENSMUSP00000133694
Original member NCBI NM_020042.2 NP_064426.2 Updated not alive Link to Nucleotide Sequence:NM_020042.2Link to Protein Sequence:NP_064426.2Re-query CCDS DB by Nucleotide ID:NM_020042Re-query CCDS DB by Protein ID:NP_064426
Current member NCBI NM_020042.3 NP_064426.2 Accepted alive Link to Nucleotide Sequence:NM_020042.3Link to Protein Sequence:NP_064426.2Re-query CCDS DB by Nucleotide ID:NM_020042Re-query CCDS DB by Protein ID:NP_064426Link to BLAST:NP_064426.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064426.2 636 Q5RKZ7-1 636 100% 0 0

Chromosomal Locations for CCDS 50143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49428442 49428564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49433170 49433296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49435095 49435262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49439422 49439586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49449100 49449161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49449435 49449546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49449749 49449861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49450262 49450372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49452211 49452331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49452795 49452842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49454030 49454790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGCGGCGCGGCCTGCGTTCGGAATAGTGCGGCAGCTCCTGAGGTCCAATGCTCGGGGTTGCAGCTCGG
GGGCTCCGGTGACGCAGCCTCGCCCCGGGGAGCCCTCGAGACCTACCAGGGAGGGGCTGTCCCTGAGGCT
CCAGTTCCTCCAGGAGCATGCGGCTCCCTTCTCTGCCTTCCTCACGGACAGCTTTGGCCGACAACATAGT
TACCTGCGGATCTCTCTCACAGAGAAGTGCAACCTCCGATGCCAGTATTGCATGCCCGAGGAGGGTGTGC
CCCTGACCCCCAAAGCTGACCTACTGACCACAGAGGAGATCCTGACCCTTGCCCGCCTCTTTGTGAAGGA
AGGTGTGGACAAGATCCGTCTCACTGGTGGGGAGCCTCTCATCCGACCGGATGTGGTGGACATCGTGGCC
AGACTTCATGGGCTGGAAGGGCTGAGAACCATCGGCCTCACCACCAACGGCATCAACCTAGCCCGGCTGC
TGCCCCGACTTCAGCAAGCAGGGCTCAATGCTGTTAACATCAGCCTGGACACTCTGGTTCCCGCCAAGTT
TGAGTTCATCGTCCGCAGAAAAGGCTTCCACAAGGTTATGGAGGGTATCCACAAAGCCATCGAGCTGGGT
TACAAGCCTGTGAAGGTGAACTGTGTGGTGATGCGAGGCCTGAATGAAGACGAGCTGCTGGACTTCGTGG
CCCTGACAGAGGGCCTTCCCTTGGACGTGCGCTTCATTGAGTACATGCCATTTGACGGCAACAAGTGGAA
CTTCAAGAAGATGGTTAGCTACAAGGAGATGCTGGACACCATCCGACAGCGGTGGCCAGGGCTGGAGAAG
CTGCCGGAGGAGGACTCGAGCACTGCCAAGGCCTTTAAGATCCCTGGCTTCCAGGGTCAGATCAGCTTCA
TCACATCCATGTCAGAGCATTTCTGTGGGACCTGCAACCGGTTGCGCATCACAGCTGATGGGAACCTCAA
GGTCTGCCTCTTTGGGAACTCTGAGGTGTCACTGCGGGACCACCTGCGGGCGGGGGCCTCTGAGGAGGAG
CTGCTGAGAATCATTGGGGCCGCAGTGGGTAGGAAGAAGCGGCAGCACGCAGGCATGTTCAATATTGCCC
AGATGAAGAACCGGCCCATGATCCTCATCGGGGTACTTTTGATGCTTCAGGATTCCCCACCAGCTCGTTG
GAGCAATTTCTCCTGGGATCCCCTCCGTGTTCGGAATCCAAGTGCCAGACAGTGTCTCTCTGACCAGATG
GCATCTTTGTGGAAGAGACACTGCATCCCCAAGGCCCTTCCTCTGTCTCAACAGTGCCTAGGGTCTGGCT
CCCCTCAGAGACACTACAGCTCCTATCCAGACCCTGACACTCACTCAAAGTGCCTTAGCACAGGGTCCCA
GGCACCTGATGCCCCCTCAGGTCCAGGGCCGACCTCAAATCAGCTAACTCATGTGGATTCAGCAGGGCGG
GCATCTATGGTAGATGTGGGTGGGAAGCCGGAGACAGAGCGGGTGGCTGTGGCCTCTGCCATGGTTCTTC
TTGGACCCGTGGCCTTCAAGCTTGTCCAGCAGAACCAACTGAAGAAGGGCGATGCTCTCGTGGTGGCCCA
GCTGGCTGGAGTCCAGGCAGCCAAGCTAACCAGTCAGTTGATCCCCCTCTGCCACCATGTGGCCCTGAGC
CACGTGCAGGTACACCTGGAGTTAGACAGCACACGCCACGCTGTGTTGATCCAGGCATCCTGCCGGGCCC
GGGGTCCCACCGGGGTAGAGATGGAGGCGCTGACCTCGGCTGCCATGGCTGCCCTGACGGTGTATGACAT
GTGCAAGGCAGTCAGCAGGGACATTGTGGTGACAGAGGTGAAGCTCATTAGTAAGACTGGAGGGCAGCGG
GGAGACTTCCATCGGGCTTAG

Translation (636 aa):
MAARPAFGIVRQLLRSNARGCSSGAPVTQPRPGEPSRPTREGLSLRLQFLQEHAAPFSAFLTDSFGRQHS
YLRISLTEKCNLRCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVA
RLHGLEGLRTIGLTTNGINLARLLPRLQQAGLNAVNISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELG
YKPVKVNCVVMRGLNEDELLDFVALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTIRQRWPGLEK
LPEEDSSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEEE
LLRIIGAAVGRKKRQHAGMFNIAQMKNRPMILIGVLLMLQDSPPARWSNFSWDPLRVRNPSARQCLSDQM
ASLWKRHCIPKALPLSQQCLGSGSPQRHYSSYPDPDTHSKCLSTGSQAPDAPSGPGPTSNQLTHVDSAGR
ASMVDVGGKPETERVAVASAMVLLGPVAFKLVQQNQLKKGDALVVAQLAGVQAAKLTSQLIPLCHHVALS
HVQVHLELDSTRHAVLIQASCRARGPTGVEMEALTSAAMAALTVYDMCKAVSRDIVVTEVKLISKTGGQR
GDFHRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH