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Report for CCDS50134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50134.1 Public Mus musculus 17 Mdfi 23 108 98 CCDS HistoryNCBI Gene:17240Re-query CCDS DB by CCDS ID:50134.1Re-query CCDS DB by GeneID:17240See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035375.13 ENSMUSP00000037888.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035375.13Link to Ensembl Protein Viewer:ENSMUSP00000037888.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035375Re-query CCDS DB by Protein ID:ENSMUSP00000037888
Original member Current member EBI ENSMUST00000066368.12 ENSMUSP00000069915.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066368.12Link to Ensembl Protein Viewer:ENSMUSP00000069915.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066368Re-query CCDS DB by Protein ID:ENSMUSP00000069915
Original member Current member NCBI NM_001109973.2 NP_001103443.1 Accepted alive Link to Nucleotide Sequence:NM_001109973.2Link to Protein Sequence:NP_001103443.1Re-query CCDS DB by Nucleotide ID:NM_001109973Re-query CCDS DB by Protein ID:NP_001103443Link to BLAST:NP_001103443.1
Original member Current member NCBI NM_001276390.1 NP_001263319.1 Accepted alive Link to Nucleotide Sequence:NM_001276390.1Link to Protein Sequence:NP_001263319.1Re-query CCDS DB by Nucleotide ID:NM_001276390Re-query CCDS DB by Protein ID:NP_001263319Link to BLAST:NP_001263319.1
Original member Current member NCBI NM_010783.3 NP_034913.2 Accepted alive Link to Nucleotide Sequence:NM_010783.3Link to Protein Sequence:NP_034913.2Re-query CCDS DB by Nucleotide ID:NM_010783Re-query CCDS DB by Protein ID:NP_034913Link to BLAST:NP_034913.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103443.1 246 P70331-2 246 100% 0 0
NP_001263319.1 246 P70331-2 246 100% 0 0
NP_034913.2 246 P70331-2 246 100% 0 0

Chromosomal Locations for CCDS 50134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47815908 47816164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47820814 47821041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47824548 47824727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47832944 47833019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGTCCCAGGTGAGCGGTCAGTGCCCTTCTCGCTGCGACGCGCCTCATGGAGTCCCCAGCGCTGCCCTGG
ACCCAGCCCAGACCATGTCCCTCCTCCCTGGGCTGGAGGTAGCAAGATCCACTCACCCTGTAGAGGCATC
TTCTGAAGAGGGCTTCCCGGAGGAGGCGGCACCCTCCATGCCCCATGACAGTGGTCTCCGGGCTCAGCAG
GCTCTGAACAGCATTGACCTCGATGTCCCCACAGAAGCTGTGACGTGCCAGCCTCAAGGGAACCCCCAAG
GCTGCACCCCACTACTGCCAAATGGCTCCAGCCACGACCACCTCTCAGAACCGGGCAGTGCAGGGCATGC
GGGGAACGGTGCTCTGGGCGGGTCCAAGGCCCACCGGAAGTTGCAGACGCATCCATCTCTGGGCAGCCAG
GCTGGAAGGAAAAGCAGAGGCAGCGCCCGGTCAGCCTCACAGGTCCCTCTCCAGGCACAGGAAGATTGCT
GCGTCCACTGCATACTGTCCTGTCTATTCTGTGAGTTCCTGACGCTCTGTAACATCCTCCTGGACTGCGC
CACCTGTGGCTCCTGCAGCTCTGAGGACTCCTGCCTCTGCTGCTGCTGCTGTGGGTCCGGCGAGTGCGCG
GACTGTGACCTGCCCTGCGACCTGGACTGCGGCATCGTGGATGCCTGCTGCGAGTCCGCAGACTGCTTGG
AGATATGCATGGAGTGCTGTGGACTCTGTTTCTCCTCCTGA

Translation (246 aa):
MSQVSGQCPSRCDAPHGVPSAALDPAQTMSLLPGLEVARSTHPVEASSEEGFPEEAAPSMPHDSGLRAQQ
ALNSIDLDVPTEAVTCQPQGNPQGCTPLLPNGSSHDHLSEPGSAGHAGNGALGGSKAHRKLQTHPSLGSQ
AGRKSRGSARSASQVPLQAQEDCCVHCILSCLFCEFLTLCNILLDCATCGSCSSEDSCLCCCCCGSGECA
DCDLPCDLDCGIVDACCESADCLEICMECCGLCFSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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