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Report for CCDS50122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50122.1 Public Mus musculus 17 Gtpbp2 23 108 98 CCDS HistoryNCBI Gene:56055Re-query CCDS DB by CCDS ID:50122.1Re-query CCDS DB by GeneID:56055See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024748.13 ENSMUSP00000024748.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024748.13Link to Ensembl Protein Viewer:ENSMUSP00000024748.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024748Re-query CCDS DB by Protein ID:ENSMUSP00000024748
Original member NCBI NM_019581.3 NP_062527.2 Updated not alive Link to Nucleotide Sequence:NM_019581.3Link to Protein Sequence:NP_062527.2Re-query CCDS DB by Nucleotide ID:NM_019581Re-query CCDS DB by Protein ID:NP_062527
Current member NCBI NM_019581.4 NP_062527.2 Accepted alive Link to Nucleotide Sequence:NM_019581.4Link to Protein Sequence:NP_062527.2Re-query CCDS DB by Nucleotide ID:NM_019581Re-query CCDS DB by Protein ID:NP_062527Link to BLAST:NP_062527.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062527.2 602 Q3UJK4 602 100% 0 0

Chromosomal Locations for CCDS 50122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46161141 46161326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46163483 46163509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46164194 46164378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46164725 46164833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46164986 46165183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46165455 46165629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46165778 46165997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46166311 46166446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46166592 46166650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46167223 46167394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46167726 46167890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46168146 46168322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGACTCGCGGGTATCGGAGCTGTTCGGCGGCTGCTGCCGGCCCGGAGGAGGCCCGGCCATGGGTGGAA
ACCTCAAAGCTCGGGGGGCCGGCGGTAGCAGCAGTTGCGGGGGCCCAAAGGGGAAGAAGAAGAACGGAAG
GAACAGAGGAGGTAAAGCCAACAACCCTCCGTACCTGCCCCCAGAGGCTGAAGATGGAAACATCGAATAT
AAACTGAAGCTGGTGAACCCATCTCAGTACCGCTTTGAGCACTTGGTGACACAAATGAAGTGGCGGCTCC
AGGAAGGACGTGGTGAGGCTGTCTACCAGATTGGGGTAGAGGACAATGGGCTGCTGGTGGGGCTGGCTGA
AGAGGAGATGCGGGCTTCCCTCAAGACCCTGCACCGGATGGCAGAGAAGGTTGGGGCAGACATCACTGTT
CTTCGGGAGCGAGAGGTGGATTATGACAGTGACGTGCCCCGGAAGATCACTGAGGTGCTAGTACGAAAGG
TCCCTGACAACCAACAGTTCCTAGATCTCCGTGTGGCCGTCCTAGGGAATGTGGACTCAGGGAAGTCAAC
CTTGCTTGGAGTCCTGACCCAAGGAGAGCTGGACAACGGGCGGGGCCGGGCCCGGCTCAACCTTTTCCGC
CACCTGCATGAGATTCAGTCTGGCCGAACCTCCAGCATCAGCTTTGAGATCCTGGGCTTTAACAGCAAGG
GAGAGGTGGTGAATTACAGCGACTCACGGACTGCAGAAGAGATCTGTGAGAGCAGCTCCAAGATGATCAC
CTTCATTGACCTGGCGGGCCACCATAAATACCTGCACACCACCATCTTTGGCCTCACCTCCTACTGCCCC
GACTGTGCCCTGCTCCTCGTCAGTGCCAACACTGGAATCGCCGGCACCACACGGGAACACCTGGGGCTGG
CCTTGGCCCTGAAAGTGCCCTTCTTCATCGTGGTCAGTAAAGTGGACCTGTGTGCTAAGACCACAGTGGA
GAGGACAGTTCGCCAGCTGGAGCGGGTCCTCAAGCAGCCTGGCTGCCACAAGGTCCCCATGCTGGTCACC
TCTGAGGATGATGCTGTCACTGCTGCCCAGCAGTTTGCCCAGTCACCCAATGTCACCCCTATATTTACAC
TGTCCAGTGTGTCTGGAGAGAGCCTGGACCTTCTTAAAGTCTTCCTGAATATCCTGCCGCCCCTCACCAA
CAGCAAGGAGCAGGAGGAGCTCATGCAACAGTTGACAGAGTTCCAGGTGGATGAAATCTACACAGTCCCA
GAGGTGGGGACTGTGGTTGGAGGAACACTATCCAGTGGGATCTGCCGCGAGGGGGACCAGCTGGTGGTAG
GCCCGACAGATGATGGCTGTTTCTTGGAGCTGAGGGTATGCAGCATCCAGCGCAACCGCTCTGCGTGTCG
TGTTCTTCGAGCAGGTCAGGCTGCTACACTCGCCCTTGGAGACTTTGACCGTGCATTGCTTCGCAAGGGC
ATGGTCATGGTGAGTCCCGAGATGAATCCCACCATCTGCTCAGTGTTTGAGGCAGAGATAGTCCTACTGT
TCCACGCCACCACCTTTCGGCGGGGATTCCAGGTGACAGTACATGTGGGCAACGTACGTCAAACAGCAGT
GGTGGAAAAGATCCACGCAAAGGACAAGCTGCGGACAGGGGAGAAGGCAGTGGTGCGTTTCCGTTTCCTG
AAACACCCAGAATACCTGAAGGTGGGCGCCAAACTGCTGTTCCGGGAGGGTGTGACCAAAGGCATCGGTC
ATGTCACGGATGTACAAGCCATCACAGCAGGAGAGGCCCAGGCCACCATGGGCTTCTGA

Translation (602 aa):
MDSRVSELFGGCCRPGGGPAMGGNLKARGAGGSSSCGGPKGKKKNGRNRGGKANNPPYLPPEAEDGNIEY
KLKLVNPSQYRFEHLVTQMKWRLQEGRGEAVYQIGVEDNGLLVGLAEEEMRASLKTLHRMAEKVGADITV
LREREVDYDSDVPRKITEVLVRKVPDNQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFR
HLHEIQSGRTSSISFEILGFNSKGEVVNYSDSRTAEEICESSSKMITFIDLAGHHKYLHTTIFGLTSYCP
DCALLLVSANTGIAGTTREHLGLALALKVPFFIVVSKVDLCAKTTVERTVRQLERVLKQPGCHKVPMLVT
SEDDAVTAAQQFAQSPNVTPIFTLSSVSGESLDLLKVFLNILPPLTNSKEQEELMQQLTEFQVDEIYTVP
EVGTVVGGTLSSGICREGDQLVVGPTDDGCFLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLRKG
MVMVSPEMNPTICSVFEAEIVLLFHATTFRRGFQVTVHVGNVRQTAVVEKIHAKDKLRTGEKAVVRFRFL
KHPEYLKVGAKLLFREGVTKGIGHVTDVQAITAGEAQATMGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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