NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50036.1 Public Mus musculus 17 Fbxl16 23 108 98 CCDS HistoryNCBI Gene:214931Re-query CCDS DB by CCDS ID:50036.1Re-query CCDS DB by GeneID:214931See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045692.8 ENSMUSP00000048562.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045692.8Link to Ensembl Protein Viewer:ENSMUSP00000048562.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045692Re-query CCDS DB by Protein ID:ENSMUSP00000048562
Original member Current member EBI ENSMUST00000236165.1 ENSMUSP00000157536.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236165.1Link to Ensembl Protein Viewer:ENSMUSP00000157536.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236165Re-query CCDS DB by Protein ID:ENSMUSP00000157536
Original member NCBI NM_001164225.1 NP_001157697.1 Updated not alive Link to Nucleotide Sequence:NM_001164225.1Link to Protein Sequence:NP_001157697.1Re-query CCDS DB by Nucleotide ID:NM_001164225Re-query CCDS DB by Protein ID:NP_001157697
Current member NCBI NM_001164225.2 NP_001157697.1 Accepted alive Link to Nucleotide Sequence:NM_001164225.2Link to Protein Sequence:NP_001157697.1Re-query CCDS DB by Nucleotide ID:NM_001164225Re-query CCDS DB by Protein ID:NP_001157697Link to BLAST:NP_001157697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157697.1 479 A2RT62 479 100% 0 0

Chromosomal Locations for CCDS 50036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25816431 25817063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25817680 25818188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25818498 25818582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25818896 25818959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25819374 25819522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGTCGAGCCCCGGTATCGATGGTGACCCCAAGCCTCCATGCTTGCCTCGAAACGGTCTGGTGAAGCTGC
CTGGCCAGCCCAACGGCCTAGGTGCAGCCAGCATCACCAAGGGCACACCTGCTGCCAAGAACCGTCCTTG
CCAGCCACCACCCCCACCGACCCTCCCACCTCCAAGCCTGGCTACACCACTATCCCGGGTTGCTCTGGCC
GGGGGGCCATGCCCCCCAGCCAGTGGACCAGCCTCGGGTCCAGTGTCTGGACCCCCAGTGGAGCGGCCAC
CACTGGCCACAGACGAGAAGATCCTTAATGGGCTTTTCTGGTATTTCTCAGCATGTGAGAAGTGCATACT
AGCTCAGGTGTGCAAGGCTTGGCGGCGTGTGCTCTACCAGCCCAAGTTCTGGGCGGGCCTCACGCCTGTG
CTGCATGCCAAGGAGCTGTACAACGTGCTGCCTGGAGGCGAGAAGGAGTTTGTGAACCTGCAGGGCTTTG
CTGCTAGAGGTTTTGAGGGCTTCTGCCTAGTTGGTGTCTCCGACTTAGACATCTGCGAGTTCATCGACAA
CTATTCTCTCTCTAAGAAGGGAGTCAAGGCCATGAGTCTCAAGCGCTCCACCATCACTGACGCTGGTCTA
GAGGTGATGCTGGAGCAGATGCAGGGAGTGGTGCGTCTGGAGCTGTCAGGCTGCAACGATTTCACCGAGG
CTGGCCTGTGGTCCAGCCTCAGTGCCCGTATCACCTCCCTGAGCGTCAGTGACTGCATCAATGTGGCAGA
TGATGCAATCGCTGCCATCTCACAACTTCTACCCAACCTGGCAGAGCTAAGCCTTCAGGCCTATCACGTG
ACTGACACGGCCCTGGCCTACTTCACAGCACGCCAGGGCCACAGCACCCACACGCTGCGCCTGCTTTCCT
GCTGGGAGATAACCAACCATGGGGTGGTCAATGTGGTGCACAGTCTGCCCAACCTCACCTCACTCAGCCT
CTCAGGCTGCTCTAAGGTCACTGATGATGGAGTGGAGCTTGTAGCTGAGAACCTGCGCAAATTGCGCAGC
CTTGACCTTTCCTGGTGCCCTCGGATCACCGATATGGCACTGGAGTATGTGGCCTGCGACTTGCACCGAC
TGGAGGAGCTCGTGCTGGACAGGTGTGTACGCATCACGGACACTGGTCTCAGCTATTTGTCCACCATGTC
GTCTCTCCGCAGCCTCTACCTGCGATGGTGCTGCCAGGTGCAGGACTTCGGGTTGAAGCACCTCTTAGCC
ATGAGAAATTTGCGACTCTTGTCTCTAGCAGGCTGCCCGCTCCTAACTACCACCGGGCTATCTGGCCTCG
TGCAACTGCAAGAGCTGGAGGAGCTGGAGCTGACCAACTGCCCTGGAGCCACACCCGAGCTCTTCAAGTA
CTTCTCGCAGCACCTGCCGCGCTGCCTCGTCATTGAATAG

Translation (479 aa):
MSSPGIDGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPAAKNRPCQPPPPPTLPPPSLATPLSRVALA
GGPCPPASGPASGPVSGPPVERPPLATDEKILNGLFWYFSACEKCILAQVCKAWRRVLYQPKFWAGLTPV
LHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYSLSKKGVKAMSLKRSTITDAGL
EVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHV
TDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENLRKLRS
LDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLA
MRNLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH