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Report for CCDS49946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49946.1 Public Mus musculus 17 Pabpc6 23 108 98 CCDS HistoryNCBI Gene:67543Re-query CCDS DB by CCDS ID:49946.1Re-query CCDS DB by GeneID:67543See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057190.3 ENSMUSP00000050792.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057190.3Link to Ensembl Protein Viewer:ENSMUSP00000050792.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000057190Re-query CCDS DB by Protein ID:ENSMUSP00000050792
Original member Current member NCBI NM_001163836.1 NP_001157308.1 Accepted alive Link to Nucleotide Sequence:NM_001163836.1Link to Protein Sequence:NP_001157308.1Re-query CCDS DB by Nucleotide ID:NM_001163836Re-query CCDS DB by Protein ID:NP_001157308Link to BLAST:NP_001157308.1

Chromosomal Locations for CCDS 49946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 9667689 9669620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGAACCCCAGCGACCCCAGCTACTCTTTGGCTTCACTCTATGTGGGGGACCTGCATCCCGACGTGACCG
AGGCGATGCTCTATGAGAAGTTCAGCCCGGCAGGGCCCATCCTCTCCATCCGGGTGTACAGGGACAGGAT
CACCCGCCGCTCGCTGGGCTACGCGTCCGTCAACTTCCAGCAGCTGGAGGACGCCGAGCGGGCCTTGGAC
ACCATGAATTTCGACGTGATAAAGGGCAAGCCGGTTCGCATCATGTGGTCTCAGCGGGACCCGTCGCTGC
GCAAGAGCGGAGTAGGGAACATATTTGTGAAAAATCTGGACAGATCCATTGACAGTAAAACGCTGTATGA
TACGTTTTCTGCCTTTGGTAACATCCTTTCCTGTAAGGTGGTGTGTGATGAGAATGGCTCCAAGGGTTAC
GGCTTTGTACACTTCGAGACACAGGAAGAAGCTGAACGAGCAATTGAGAAAATGAACGGGATGTTCCTAA
ATGACCACAAAGTGTTCGTTGGTCGCTTTAAGTCTCGTAGAGACAGGCAGGCTGAACTTGGAGCCAGGGC
CAAGGAGTTCACCAATGTTTACATCAAGAATTTGGGAGAAGATATGGATGATGAGAGACTCCAGGATCTA
TTTGGCAGATTTGGGCCTGCCTTAAGTGTTAAAGTCATGACTGATGAAAGTGGAAAATCCAAAGGATTCG
GATTCGTAAGCTTTGAAAGGCATGAAGATGCACGAAAGGCAGTGGAAGAGATGAATGGAAAAGACCTCAA
TGGAAAACAAATTTATGTAGGTCGTGCTCAGAAAAAGGTGGAACGACAGACTGAACTGAAGCACAAATTC
GGGCAGATGAAGCAAGATAAGCACAAAATTGAACGGGTACCACAAGATAGAAGCGTCAGATGCAAAGGTG
TTAACCTCTATGTGAAAAACCTTGATGATGGTATCGATGATGAGCGTCTCCGGAAGGAGTTTTCCCCTTT
TGGTACGATTACTAGTGCAAAGGTAACGATGGAGGGTGGGCGCAGCAAAGGGTTTGGTTTTGTATGTTTT
TCCTCTCCAGAAGAAGCCACCAAAGCTGTTACAGAAATGAATGGTAAAATAGTGGCCACCAAACCACTCT
ACGTAGCTTTAGCTCAACGCAAAGAGGAGCGCCAGGCTCACCTCAGTAACCAGTACATGCAAAGAATGGC
AAGCACCAGTGCCGGGCCTAACCCAGTCGTCAGCCCTTTCCAGCCAGCGCAGGGGCCGTCAGGTTACTGC
ATGACAGCTACACCAACTCAGAGCCGTAGGGCATACTGTGCTCCTAATCAGACTACTCAGCAAGGACCAA
GTGCCCGTGGGAGTGCTCACGGTACCAGAGCTCATCCATTCCAAAACATGTCTAGTACCATCCACCCATC
ACATACTATGCCATCATTTAGTACTTCAGGACCCACTACCTCACAGGCTATACGACATCGTACTGCCAGC
ACATCCACACAGATGATGGGCCCACATCCTGCAGCTGCTGCTGCTGCTGCAGCTGCTCCTGCCACCCGCA
CAATTACCCAGTATAAATATACTGCTGGAGTCCGAAATCCCCCTCAGCATCCTAATACACAGCCACATGT
CAGCACGCAGCGGTCTGCTGTTCCTGTCCAAGGTAAAGAGTCTTTGACTGCCTCCATGTTGGCCTCTGCT
CCTCCTCAAGCTCAAAAGCAAATGTTAGGGGAATGGCTCTTCTCTCTTATTCAGGCCATGCACCCTGCCC
TTGCTGGTAAAATCACGGGTATGCTGTTGGAAATTGATAATATAGAGCTACGCCACATGCTTGAGTCTCC
AGAGTGTCTCCACACCAAAGTTGATGAAGCCATAGCTGTACTGCAAGCTCACCAAGCTAAAGAGACTTCA
CAGAAAGCAGTCAGCAGTGTTGCTGGTGTCCCAAATGCTTAA

Translation (643 aa):
MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD
TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGY
GFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDL
FGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKF
GQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCF
SSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPNPVVSPFQPAQGPSGYC
MTATPTQSRRAYCAPNQTTQQGPSARGSAHGTRAHPFQNMSSTIHPSHTMPSFSTSGPTTSQAIRHRTAS
TSTQMMGPHPAAAAAAAAAPATRTITQYKYTAGVRNPPQHPNTQPHVSTQRSAVPVQGKESLTASMLASA
PPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTKVDEAIAVLQAHQAKETS
QKAVSSVAGVPNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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