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Report for CCDS49841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49841.1 Public Mus musculus 16 Ildr1 23 108 98 CCDS HistoryNCBI Gene:106347Re-query CCDS DB by CCDS ID:49841.1Re-query CCDS DB by GeneID:106347See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119464.1 ENSMUSP00000112539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119464.1Link to Ensembl Protein Viewer:ENSMUSP00000112539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119464Re-query CCDS DB by Protein ID:ENSMUSP00000112539
Original member Current member NCBI NM_134109.2 NP_598870.1 Accepted alive Link to Nucleotide Sequence:NM_134109.2Link to Protein Sequence:NP_598870.1Re-query CCDS DB by Nucleotide ID:NM_134109Re-query CCDS DB by Protein ID:NP_598870Link to BLAST:NP_598870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598870.1 516 Q8CBR1-2 516 100% 0 0

Chromosomal Locations for CCDS 49841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36694160 36694214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36708250 36708420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36709479 36709628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36715501 36715620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36716107 36716253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36721538 36721669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36721883 36722638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36725517 36725536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGGCTGCGGATTGCTCGCTGCTGGCCTGCTCCTCTTCACCTGGCTCCCAGCAGGGTGTCTGTCCTTGC
TAGTCACAGTCCAGCACACAGAACGCTATGTTACTCTGTTTGCCTCCGTTACCCTCAAGTGTGACTACAC
CACCTCTGCCCAGCTCCAGGACGTGGTTGTGACATGGCGCTTCAAGTCCTTCTGCAAGGATCCCATCTTT
GACTACTTCTCTGCCTCATACCAGGCAGCTTTGTCCCTGGGCCAGGACCCCTCCAATGACTGTAGTGACA
ATCAGAGGGAAGTTCGCATCGTGGCGCAGCGGCGTGGGCAGAGTGAGCCCGTGCTGGGGGTGGATTACCG
GCAACGCAAGATCACCATCCAGAACCGAGCAGATCTTGTGATTAATGAAGTGATGTGGTGGGATCATGGA
GTATACTATTGTACCATCGAGGCTCCAGGAGACACGTCAGGAGACCCAGATAAGGAGGTGAAGCTCATTG
TCCTGCATTGGCTGACAGTGATTTTCATCATTCTTGGAGCCCTCCTACTCCTGCTGCTGATTGGTGTATG
CTGGTGCCAGTGTTGTCCGCAGTATTGCTGCTGCTATATCCGCTGCCCCTGCTGTCCTACCCGCTGTTGC
TGCCCTGAGGAAGCCCTGGCCCGCCACCGCTACATGAAGCAGGTTCAGGCCCTAGGTCCTCAGATGATGG
AAAAACCCCTGTACTGGGGGGCGGACAGGAGCTCCCAAGTTTCATCTTATGCAATGAACCCGCTGCTGCA
GCGAGATCTGTCCTTACAGTCCAGCCTTCCACAGATGCCAATGACCCAGATGGCTGCTCACCCTCCGGTG
GCTAATGGTGTCCTGGAATATTTGGAGAAAGAATTGCGGAACCTCAACCCAGCCCAACCTCTGCCTGCGG
ATCTCAGAGCCAAATCTGGCCACCCTTGCAGCATGCTCTCCTCCCTGGGCTCCGCAGAGGTTGTGGAACG
CAGAGTCATCCACCTGCCCCCACTAATCAGAGACCCACCGTCCTCCAGGACCAGCAACCCCTCACACCAG
CAGCGGCTCAATGCTGTTTCTTCCAGACACTGCGATCTGAGTGAGCGCCCGAGGCAGCGCCATCACTCCG
ATTTCCTCCGAGAGCTCCAGGACCAGGGGATGAGACCCTGGGCCCCGGGGAGAGGGGAGCTGGACCCCCA
TTGGAGTGGGAGACACCACCGCTCTAGGCCCAGCGAGTCATCCATGCCTTGGTCAGACTGGGACAGCCTG
AGCGAATGTCCCTCATCCAGTGAGGCTCCTTGGCCCCCCAGACGACCAGAGCCCAGGGAAGGCGCCCAGA
GACGTGAGAGACGCAGGCATCGCAGCTACTCGCCTCCTCTACCCTCGGGCCCCAGCTCTTGGAGCTCTGA
AGAGGAGAAAGAGTCGCTGCCCAGGAACTGGGGTGCCCAGCGACGTCACCATCACCGCCGCCGCCGCTCA
CAGTCTCCAAACTGGCCTGAGGAGAAGCCGCCCAGCTACCGCTCACTGGATGTGACTCCAGGAGAGAGAG
AGCTCCCATAG

Translation (516 aa):
MGCGLLAAGLLLFTWLPAGCLSLLVTVQHTERYVTLFASVTLKCDYTTSAQLQDVVVTWRFKSFCKDPIF
DYFSASYQAALSLGQDPSNDCSDNQREVRIVAQRRGQSEPVLGVDYRQRKITIQNRADLVINEVMWWDHG
VYYCTIEAPGDTSGDPDKEVKLIVLHWLTVIFIILGALLLLLLIGVCWCQCCPQYCCCYIRCPCCPTRCC
CPEEALARHRYMKQVQALGPQMMEKPLYWGADRSSQVSSYAMNPLLQRDLSLQSSLPQMPMTQMAAHPPV
ANGVLEYLEKELRNLNPAQPLPADLRAKSGHPCSMLSSLGSAEVVERRVIHLPPLIRDPPSSRTSNPSHQ
QRLNAVSSRHCDLSERPRQRHHSDFLRELQDQGMRPWAPGRGELDPHWSGRHHRSRPSESSMPWSDWDSL
SECPSSSEAPWPPRRPEPREGAQRRERRRHRSYSPPLPSGPSSWSSEEEKESLPRNWGAQRRHHHRRRRS
QSPNWPEEKPPSYRSLDVTPGERELP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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