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Report for CCDS49721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49721.1 Public Mus musculus 15 H1f7 23 108 98 CCDS HistoryNCBI Gene:70069Re-query CCDS DB by CCDS ID:49721.1Re-query CCDS DB by GeneID:70069See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060855.6 ENSMUSP00000127616.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060855.6Link to Ensembl Protein Viewer:ENSMUSP00000127616.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000060855Re-query CCDS DB by Protein ID:ENSMUSP00000127616
Original member Current member NCBI NM_027304.2 NP_081580.2 Accepted alive Link to Nucleotide Sequence:NM_027304.2Link to Protein Sequence:NP_081580.2Re-query CCDS DB by Nucleotide ID:NM_027304Re-query CCDS DB by Protein ID:NP_081580Link to BLAST:NP_081580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081580.2 398 Q8CJI4 398 100% 0 0

Chromosomal Locations for CCDS 49721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98256070 98257266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGCTGAGGCTGTCCAGCCCAGTGGGGAATCCCAAGGCGCAGAACTTACGATCCAGATCCAGCAGCCTG
CAGAGAGAGCCCTGAGAACGCCAGCCAAGCGGGGTACGCAGTCAGTGCTCAGAGTGTCCCAGCTGCTGCT
CAGGGCCATTGCTGGCCACCAGCACCTGACTCTGGATGCGCTCAAGAAGGAGCTGGGAAACGCCGGCTAC
GAAGTGCGCCGGGAGATCTCCTCTCACCACGAGGGGAAGTCCACCAGGTTGGAGAAAGGCACGCTCCTGA
GGGTCAGTGGCAGCGACGCTGCTGGCTACTTCAGGGTCTGGAAGATTTCAAAGCCGAGGGAAAAGGCGGG
ACAATCCCGGTTGACGCTGGGCAGCCACTCTTCTGGGAAGACCGTGCTCAAATCCCCCAGACCACTCAGG
CCCCGCTCGCGTCGCAAGGCAGCCAAGAAGGCCAGAGAAGTCTGGAGACGCAAGGCCAGGGCTTTGAAGG
CAAGGTCCAGGAGGGTCAGAACAAGGTCCACATCAGGGGCCAGATCAAGGACCAGGTCAAGAGCCTCTTC
AAGGGCCACTTCAAGGGCCACATCAAGGGCCAGATCAAGAGCCCGGTCAAGGGCCCAGTCAAGTGCCAGA
TCAAGCGCCAGGTCAAGCGCCAAGTCAAGCGCCAAGTCAAGCACCAGGTCTAGCGCCAAGTCATGGGCCA
GGTCAAAGGCTAGGTCAAGGGCAAGGTCTAGAGCTAAGGACCTAGTGCGTTCCAAAGCCCGGGAACAGGC
TCAGGCCAGGGAACAGGCTCGTGCTAGAGCCAGGGAACAGGCTCATGCCAGAGCCAGGACACAAGACTGG
GTCAGGGCCAAGGCACAGGAGTTTGTCAGTGCCAAAGAGCAGCAGTACGTCAGAGCCAAGGAGCAGGAGC
GTGCCAAGGCCAGGGAACAGGTGCGTATCGGAGCCAGGGATGAAGCCAGGATCAAGGCAAAAGATTACAA
CAGAGTACGGCCTACAAAGGAAGACACCAGTCCTAGGCCAGCAGAGGAGAAGAGTTCAAACTCCAAACTC
AGGGAAGAGAAGGGACAGGAACCCGAGAGGCCAGTAAAACAGACCATCCAGAAACCAGCTCTGGACAACG
CTCCCAGCATACAAGGAAAAGCATGCACAAAGTCTTTTACCAAAAGTGGTCAGCCTGGGGACACTGAGTC
TCCTTAA

Translation (398 aa):
MAEAVQPSGESQGAELTIQIQQPAERALRTPAKRGTQSVLRVSQLLLRAIAGHQHLTLDALKKELGNAGY
EVRREISSHHEGKSTRLEKGTLLRVSGSDAAGYFRVWKISKPREKAGQSRLTLGSHSSGKTVLKSPRPLR
PRSRRKAAKKAREVWRRKARALKARSRRVRTRSTSGARSRTRSRASSRATSRATSRARSRARSRAQSSAR
SSARSSAKSSAKSSTRSSAKSWARSKARSRARSRAKDLVRSKAREQAQAREQARARAREQAHARARTQDW
VRAKAQEFVSAKEQQYVRAKEQERAKAREQVRIGARDEARIKAKDYNRVRPTKEDTSPRPAEEKSSNSKL
REEKGQEPERPVKQTIQKPALDNAPSIQGKACTKSFTKSGQPGDTESP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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