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Report for CCDS49658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49658.1 Public Mus musculus 15 Rbfox2 23 108 98 CCDS HistoryNCBI Gene:93686Re-query CCDS DB by CCDS ID:49658.1Re-query CCDS DB by GeneID:93686See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166610.7 ENSMUSP00000130673.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166610.7Link to Ensembl Protein Viewer:ENSMUSP00000130673.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166610Re-query CCDS DB by Protein ID:ENSMUSP00000130673
Original member NCBI NM_001110828.2 NP_001104298.1 Updated not alive Link to Nucleotide Sequence:NM_001110828.2Link to Protein Sequence:NP_001104298.1Re-query CCDS DB by Nucleotide ID:NM_001110828Re-query CCDS DB by Protein ID:NP_001104298
Current member NCBI NM_001110828.3 NP_001104298.1 Accepted alive Link to Nucleotide Sequence:NM_001110828.3Link to Protein Sequence:NP_001104298.1Re-query CCDS DB by Nucleotide ID:NM_001110828Re-query CCDS DB by Protein ID:NP_001104298Link to BLAST:NP_001104298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104298.1 381 Q8BP71-3 381 100% 0 0

Chromosomal Locations for CCDS 49658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77084162 77084206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77085578 77085650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77086067 77086155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77094451 77094490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77097940 77098084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77099240 77099332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77099439 77099492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77102879 77102939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77105577 77105669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77113605 77113658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77116921 77117067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77132717 77132941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77153530 77153556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGAGAAAAAGAAAATGGTAACTCAGGGTAACCAGGAGCCAACAACAACTCCTGACGCAATGGTTCAGC
CTTTTACTACCATCCCGTTCCCACCACCTCCACAAAATGGAATTCCCACAGAATATGGAGTGCCACACAC
TCAGGACTATGCCGGCCAGACCAGTGAACATAACCTGACCCTCTACGGGAGTACGCAGCCTCATGGAGAA
CAGAGTAGCAATTCACCCAGCAACCAGAATGGATCTCTCACGCAGACAGAAGGTGGAGCACAGACAGACG
GACAACAGTCACAGACACAAAGTAGTGAAAATTCAGAGAGTAAATCTACGCCCAAGCGACTACATGTCTC
TAATATTCCCTTCCGCTTCCGAGACCCTGACCTCCGGCAGATGTTTGGGCAGTTTGGCAAAATCCTAGAT
GTGGAAATAATCTTTAATGAGCGCGGCTCCAAGGGATTCGGGTTCGTAACTTTCGAGAATAGTGCTGATG
CAGACAGGGCCAGGGAGAAATTGCACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTGAATAATGCAAC
AGCACGGGTCATGACCAACAAGAAGATGGTCACGCCATATGCAAATGGCTGGAAGTTAAGCCCAGTAGTT
GGAGCTGTGTATGGTCCTGAGTTATATGCAGCATCCAGCTTTCAAGCTGATGTGTCCCTAGGCAATGAGG
CGGCTGTGCCCTTGTCAGGAAGAGGAGGCATCAACACTTACATCCCTCTAATCAGTCTCCCTTTAGTTCC
TGGCTTCCCTTACCCAACTGCAGCCACCACGGCAGCTGCTTTCCGAGGAGCCCATCTGAGGGGCAGAGGG
CGGACAGTGTATGGTGCAGTCCGAGCGGTACCTCCAACAGCCATCCCCGCCTATCCAGGTGTGGTTTACC
AGGACGGATTTTACGGTGCTGACCTCTATGGTGGATATGCAGCCTACAGATATGCACAGCCTGCTACTGC
AACCGCAGCCACAGCTGCTGCAGCCGCTGCAGCCGCTTACAGCGACGGTTACGGCAGGGTGTACACAGCT
GACCCCTACCATGCCCTCGCCCCTGCCGCCAGCTATGGAGTTGGCGCTGTGGCGAGTTTGTACCGAGGTG
GCTACAGCCGATTTGCCCCCTACTGA

Translation (381 aa):
MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQPHGE
QSSNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD
VEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVV
GAVYGPELYAASSFQADVSLGNEAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRG
RTVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA
DPYHALAPAASYGVGAVASLYRGGYSRFAPY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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