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Report for CCDS49601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49601.1 Public Mus musculus 15 Oxr1 23 108 98 CCDS HistoryNCBI Gene:170719Re-query CCDS DB by CCDS ID:49601.1Re-query CCDS DB by GeneID:170719See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166917.2 ENSMUSP00000130456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166917.2Link to Ensembl Protein Viewer:ENSMUSP00000130456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166917Re-query CCDS DB by Protein ID:ENSMUSP00000130456
Original member Current member NCBI NM_001130164.1 NP_001123636.1 Accepted alive Link to Nucleotide Sequence:NM_001130164.1Link to Protein Sequence:NP_001123636.1Re-query CCDS DB by Nucleotide ID:NM_001130164Re-query CCDS DB by Protein ID:NP_001123636Link to BLAST:NP_001123636.1

Chromosomal Locations for CCDS 49601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 41831064 41831129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41850459 41850584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41851375 41851527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41853322 41853417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41854921 41854994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41859158 41859293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGTCCCGTCTCTGGTATGGGAAAAAAGGGAGAAGACATCAGCCAGTTAACCATAAATACACTCTGATTA
CTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCG
ACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTGAAAAGCTTACTAAGCACCTTCCA
CCAAGAACCATTGGCTATCCATGGACGCTTGTGTACGGTACTGGGAAGCATGGTACAAGTTTGAAGACCC
TTTATCGAACAATGACAGGTTTAGACACTCCGGTGCTGATGGTGATTAAAGACAGTGATGGACAGGTTTT
TGGTGCATTAGCATCAGAGCCATTTAAAGTAAGTGATGGCTTTTACGGTACTGGAGAAACATTTGTTTTC
ACATTCTGCCCAGAATTTGAGGTCTTTAAGTGGACAGGAGATAATATGTTTTTTATCAAAGGAGACATGG
ATTCATTAGCATTTGGTGGTGGAGGAGGGGAATTTGCTCTTTGGCTTGATGGAGATCTCTACCATGGAAG
AAGCCATTCCTGTAAAACGTTTGGGAATCATACACTTTCTAAGAAGGAAGATTTCTTTATCCAAGACATT
GAAATCTGGGCTTTTGAATAA

Translation (216 aa):
MSRLWYGKKGRRHQPVNHKYTLITTREDINSKQVAPAKADLEPESFRPNLSDPSELLLPDQIEKLTKHLP
PRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPFKVSDGFYGTGETFVF
TFCPEFEVFKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGDLYHGRSHSCKTFGNHTLSKKEDFFIQDI
EIWAFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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