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Report for CCDS49498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49498.1 Public Mus musculus 14 Nedd8 23 108 98 CCDS HistoryNCBI Gene:18002Re-query CCDS DB by CCDS ID:49498.1Re-query CCDS DB by GeneID:18002See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010520.9 ENSMUSP00000010520.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010520.9Link to Ensembl Protein Viewer:ENSMUSP00000010520.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000010520Re-query CCDS DB by Protein ID:ENSMUSP00000010520
Original member Current member EBI ENSMUST00000163750.7 ENSMUSP00000130492.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163750.7Link to Ensembl Protein Viewer:ENSMUSP00000130492.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163750Re-query CCDS DB by Protein ID:ENSMUSP00000130492
Original member Current member NCBI NM_008683.4 NP_032709.1 Accepted alive Link to Nucleotide Sequence:NM_008683.4Link to Protein Sequence:NP_032709.1Re-query CCDS DB by Nucleotide ID:NM_008683Re-query CCDS DB by Protein ID:NP_032709Link to BLAST:NP_032709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032709.1 81 P29595 81 100% 0 0

Chromosomal Locations for CCDS 49498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55662529 55662625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55663415 55663497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55663812 55663859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55671795 55671812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGCTAATTAAAGTGAAGACGCTGACTGGGAAGGAGATTGAGATAGACATCGAACCCACAGACAAGGTGG
AGCGAATCAAGGAGCGTGTGGAAGAAAAAGAAGGGATTCCCCCCCAGCAGCAGCGGCTCATCTACAGTGG
CAAGCAAATGAATGATGAGAAGACAGCAGCTGATTACAAGATTCTAGGTGGTTCCGTCCTCCACCTGGTG
TTGGCTCTTAGAGGAGGAGGTGGTCTTGGGCAGTGA

Translation (81 aa):
MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV
LALRGGGGLGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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