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Report for CCDS49471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49471.1 Public Mus musculus 14 Fbxo34 23 108 98 CCDS HistoryNCBI Gene:78938Re-query CCDS DB by CCDS ID:49471.1Re-query CCDS DB by GeneID:78938See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095941.8 ENSMUSP00000093634.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095941.8Link to Ensembl Protein Viewer:ENSMUSP00000093634.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095941Re-query CCDS DB by Protein ID:ENSMUSP00000093634
Original member Current member EBI ENSMUST00000165714.1 ENSMUSP00000130036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165714.1Link to Ensembl Protein Viewer:ENSMUSP00000130036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165714Re-query CCDS DB by Protein ID:ENSMUSP00000130036
Original member Current member EBI ENSMUST00000163324.7 ENSMUSP00000131708.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163324.7Link to Ensembl Protein Viewer:ENSMUSP00000131708.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163324Re-query CCDS DB by Protein ID:ENSMUSP00000131708
Original member Current member EBI ENSMUST00000168833.8 ENSMUSP00000132271.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168833.8Link to Ensembl Protein Viewer:ENSMUSP00000132271.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168833Re-query CCDS DB by Protein ID:ENSMUSP00000132271
Original member Current member NCBI NM_001146085.1 NP_001139557.1 Accepted alive Link to Nucleotide Sequence:NM_001146085.1Link to Protein Sequence:NP_001139557.1Re-query CCDS DB by Nucleotide ID:NM_001146085Re-query CCDS DB by Protein ID:NP_001139557Link to BLAST:NP_001139557.1
Original member Current member NCBI NM_001146086.1 NP_001139558.1 Accepted alive Link to Nucleotide Sequence:NM_001146086.1Link to Protein Sequence:NP_001139558.1Re-query CCDS DB by Nucleotide ID:NM_001146086Re-query CCDS DB by Protein ID:NP_001139558Link to BLAST:NP_001139558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139557.1 695 Q80XI1-1 695 100% 0 0
NP_001139558.1 695 Q80XI1-1 695 100% 0 0

Chromosomal Locations for CCDS 49471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 47529185 47531272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGCACCTTAAGCTGTACTGGAAACTCCAGAAGAAAGAGCGCCCTCTTGAGGTCAGCAGGGACACCCTGA
GAACGCCTATGAGCCACGGAAAGGCCAACGGTGATGTGAAGGCCAGAGCCAGCTACATGAAACCCACCGT
CCTTCCTTCAGCCTCCCTTGTCAAAGCATCGTCTAGAAAACCTTTTGGGATCCTTTCTCCAAATGTTCTG
TGCAGTATGAGTGGGAAGAGCCCTGTGGAGAACAGCTTGAATGTTAAAGCCAAAAAGAACGTGCTGTCTG
CAGCCGTGCACCAGAGTGAGGAGGGGCTGCCTGGGACCTGGGCTATTGTCAAACCTGGGAACACGAAGGA
GAAAATTGCATTCTTTGCAGCCCACCAGTATAGCAATAGGATAGGCTCTATGAAAATTAAAAGTTCCTGG
GATATCGATGGGAGAGCCACTAAAAGAAGGAAAAAATCAGGAGATCTTAAGAAAGCCAAGTTACAGCTAG
AAATGATGAGAGAGATCAACAGCCAGTGCTACCAGTCTGAGCCGTTTGTGTGTGGCGTGGAGCACTGTTC
TGTGCACTACATGAGTGACAGCGGGGACGGTGTCTGTGCTGCGAGGCCTCTGTCGGTGATACAGATGGTT
GCCTTCCTTGAGCAGAAGGCCACTGCTCTGCTAGCTAGCTGCACAAAAAACTGCACAAATTCGCCTGCCA
TTGTGAAGATTTCTGGCCAGTCCCGAGGTATACCGCCTGCACCTGAGCCCTTCTCTGCTCCGGAAACTTG
TGAAGAACCCAAGGAACAAGAAAATCCCGAGACTGGCAGATCCCAGGGTGAGCCAGTCCGTGTCCTTGAC
ATGGTAGCCAGGTTGGAGTCTGAGTGCCTGAAGCACCAGGGCCAGCGGGAACCCGGGAGCTTGTCACGCA
ATAACAGTTTCCGTCGAAATGTAGGCAGGGTGTTGCTCACTAATGGTTCTCAGGCCAGCGACAAAAGTGA
AGAGGGCTCTGCAGACACAGCCGACCCTCAGGAGAATCCCTTGCAGCCGGTATCTGTGGGTGAAGAACCC
TCCGTAACTGAGCATCATTCTGTAGGGGAGCAGGCCTGGGATGGCACTTCTCAAAGCTGTCCCTCATTGC
CAGCCACTGTGAGCTTCCACATGGACAGCACAGATCTAGAGCCGGGTCAGCAAACAGCTATGAAGAGCTG
CAGCCGGGATGACGTAGAAATGGTGGAGGAATTTGATGAATTGCCTACAGATGCTGTCCGTCGCATAAGA
AGAGAGCTTGTAACAGTCACAAAGCACAGTCCTGAGCAGAGGCAGGACCCGCTGTGCATCAGCATCACTG
TGTGCACGGTAGAGAAAGACCGGCCGGCGGCTTTAGACTCCCTTGAGGAGCCTCTTCCCGGGATGCTCTT
CTTTCTGTCATCTGGACAGGACCAGCAAGCGCACCCCCAGCTGAGGGAACACCCAGCACCAGAGGCCTCA
GAGGCCAGTCAGCCTCAAGATGCTGCTGAGGGCAGCAGTGCAGGTGAGGAGAAAGATGCCTCTGTGGAGC
CGCTCCTCCCAGCAGCCTCTCCGGGAGGGAGCACCTCGCAGGTGCTTGAGGCAGCCACGTGCAAGAAGCA
GGTGTCACAGGACTTTCTGGAGACCAGGTTTAAGATCCAGCAGCTTCTGGAGCCTCAGCAGTACATGGCA
TGCCTGCCCCACCACATCATAGTGAAAATCTTCAGGTTACTCCCTACCCTGAGTTTAGCCATTCTTAAAT
GTACCTGTCGCTACTTCAAGTCCATCATTGAATACTACAACATCAGGCCAGCAGATTCTCGGTGGGTTCG
AGACCCACGCTATAGGGAAGACCCTTGCAAGCAGTGCAAGAAAAAGTATGTGAAAGGGGATGTGTCCCTG
TGCCGGTGGCACCCCAAACCCTATTGCCAGGCTTTGCCATATGGGCCTGGCTACTGGATGTGCTGCCACC
AGTCTCAGAAGGGCTTTCCTGGCTGTAAGTTAGGCCTTCATGACAATCACTGGTTACCTGCCTGCCATAG
CTTTAACCGGGCAATCCATAAGAAGACGAGAGGGAGTGAGACGGAAGAGGAGTACTGA

Translation (695 aa):
MHLKLYWKLQKKERPLEVSRDTLRTPMSHGKANGDVKARASYMKPTVLPSASLVKASSRKPFGILSPNVL
CSMSGKSPVENSLNVKAKKNVLSAAVHQSEEGLPGTWAIVKPGNTKEKIAFFAAHQYSNRIGSMKIKSSW
DIDGRATKRRKKSGDLKKAKLQLEMMREINSQCYQSEPFVCGVEHCSVHYMSDSGDGVCAARPLSVIQMV
AFLEQKATALLASCTKNCTNSPAIVKISGQSRGIPPAPEPFSAPETCEEPKEQENPETGRSQGEPVRVLD
MVARLESECLKHQGQREPGSLSRNNSFRRNVGRVLLTNGSQASDKSEEGSADTADPQENPLQPVSVGEEP
SVTEHHSVGEQAWDGTSQSCPSLPATVSFHMDSTDLEPGQQTAMKSCSRDDVEMVEEFDELPTDAVRRIR
RELVTVTKHSPEQRQDPLCISITVCTVEKDRPAALDSLEEPLPGMLFFLSSGQDQQAHPQLREHPAPEAS
EASQPQDAAEGSSAGEEKDASVEPLLPAASPGGSTSQVLEAATCKKQVSQDFLETRFKIQQLLEPQQYMA
CLPHHIIVKIFRLLPTLSLAILKCTCRYFKSIIEYYNIRPADSRWVRDPRYREDPCKQCKKKYVKGDVSL
CRWHPKPYCQALPYGPGYWMCCHQSQKGFPGCKLGLHDNHWLPACHSFNRAIHKKTRGSETEEEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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